Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00057 ATGGTCCACCTCCAGGGTACATGGTTGGTCCAAGCTACCCAGGACCTGCACCCGTATGATGTGTGCCTATGCCACCACCTGGCTCCATTAGGGGACCCCATCATCGGAACTTGGTTCCATATCTTGTCAACCCAGCACCTCAGCCACACCTCCCACATTGTTGTCGAGTTTGTTGGGTTCGTGACCAAGATTGACAAGCATTCTGGTAAGGAGCTCGAGAAGGTGCCCAAGTTTTCGAAGAATGCTGATGCAGGTTTTGTTAAAATAATTCCAACCAAGCCTATGGTTGTTGAGACTCCCTCTGCGTACCCTCCACTTGGTTGCTGTGCTATGAGGGGCATGCGTCAAACTGCGATTGTTCTAAATATAGCCGTGTCTCATGCGTCAATGTGTCGTTCAAGAGTGTACAAGGTGAACATTATTCAGGATGATGTGGAGACACAAAATGTCTCTAAAAGGCCCGTGCCATTATGGCCAATTCCAACAAGCAGTCCACATGAGCACTCCAGCCTCAACTTGTGCTCCCATATCTCCAATTCTCATCTGAGATGTTTCGAGCTACCCAATCTAGACATTGTTCCAACAATAGAAGAGTATGTGACAATGATGGGATTACCGATCAACGAAGGTTCAGGGGTGTACCTTTATAAGGGACGATACGTGGAAGAAAAGAAAGTAATGAAAATGATCGTCACACTAAACATGGTGGATCAGGCAGCCATGGATGTGTTCCATCAGTATGAAGAGCAAGGGGCAAACTCAATTCCTGCCATTCTAGCAGATACCCTTCTTTCAGTCGAGATATGTCATCAGAAAAAGGGAGGGACACTGAGATGCTGCTCACACATGTTATATGTTTGGATTGTGACTCATCCTAGGGAGGAGCAGTTTGGAGGTTTGAGCTTTCAATATGATGCGGGGAACATTGTTAAACAACAAATAGAGGTTAGAGATGCTTGGAAGAGCATTCAGAAAATGGGAGAAAAGGAATTGGGAAAGCCAAAGGTAATTGCTTCAACAGAATACAAAGAATGGAGGATGGCGAGAGGAACACAAGCTTATGTCCCTAGGAAAGCCCATCACAGTGAAGGTCCATCACAGGAAGCAATCCAAGCTGTGGCACACATGACTTCTCAGATGGTGATGATGAAAGCGCAGATGAGGTCTCTTGAAGAAAAAGGATCTGGAACCATTGCACGACCAAGGAAAGACAACACCAATCAAACCCGAGCTTATAACACTAGATCTCGGACAAGAATGGAAGCTGACAATCCAGAAGGAAGAAATTTGAGCATGGAGGTAGATGCAGTTAGGGGGAAAATGAATGAGATGTCTGAGGCTCAAATAAGAATGAAAGAAACTCTGAGGGGCATAAGAGAAGCCCTTAATCTGGCAGGGTTGAATGCAGCAGCGAGAAGAGGCCCTTCAAATGCGACCACCCCTTCATTCCCAGGCCTCTCTTTTGGTTTCAATAACAATAGGGAGCAAGTAAACCCTAACCACGACCAACCTCATCAGGCTGTACAGCTAGAGGTGCCTATTGGAGAGGGTTATCAAGCAGTGGAGAATCTACACACACCTTCTTTTTTGGAGCTTTTCAGCTCAGCCTGTTTCGAAGCCTCACTGACACGGTTTCGTAATGCCAAGGCCAAGGCTTTACGTCCCTAG 1668 0.4634 MVHLQGTWLVQATQDLHPYDVCLCHHLAPLGDPIIGTWFHILSTQHLSHTSHIVVEFVGFVTKIDKHSGKELEKVPKFSKNADAGFVKIIPTKPMVVETPSAYPPLGCCAMRGMRQTAIVLNIAVSHASMCRSRVYKVNIIQDDVETQNVSKRPVPLWPIPTSSPHEHSSLNLCSHISNSHLRCFELPNLDIVPTIEEYVTMMGLPINEGSGVYLYKGRYVEEKKVMKMIVTLNMVDQAAMDVFHQYEEQGANSIPAILADTLLSVEICHQKKGGTLRCCSHMLYVWIVTHPREEQFGGLSFQYDAGNIVKQQIEVRDAWKSIQKMGEKELGKPKVIASTEYKEWRMARGTQAYVPRKAHHSEGPSQEAIQAVAHMTSQMVMMKAQMRSLEEKGSGTIARPRKDNTNQTRAYNTRSRTRMEADNPEGRNLSMEVDAVRGKMNEMSEAQIRMKETLRGIREALNLAGLNAAARRGPSNATTPSFPGLSFGFNNNREQVNPNHDQPHQAVQLEVPIGEGYQAVENLHTPSFLELFSSACFEASLTRFRNAKAKALRP* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00057 555 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 46 118 IPR009001 -
Rops4g00057 555 Gene3D Translation factors 44 125 - -
Rops4g00057 555 Coils Coil 373 393 - -
Rops4g00057 555 PANTHER ELONGATION FACTOR 1 ALPHA 49 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00057 Rops-Chr4 1768158 1773373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00057 49 120 Eukaryotic Initiation Factors Gene Family AT1G07930 68.056 4.78e-23 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00057 K03231 - ccaj:109793946 109.768