Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00056 ATGGAGAATAACGCATTCAAAGATGAAAACCTTATTGAAAACGAACAAGAAGTAATCGCTGAATCCTTTATTTGCTGCGTTTGCCTGGATTTATTATACAAGCCCATTGTGCTATCTTGTGGTCACGTATCGTGTTTCTGGTGTGTCCATAAATCAATGAATGGTTGGCGTGAGTCTCATTGTCCAATTTGTAGGCATCCGTACTATCACTTTCCAACAATCTGTCAAATGCTTCACTTTTTACTTCTTAAGATCTATCCTATTGCTTACAAGAGAAGAGAAAATCAGACACGTGAGGAAGAGGAGAAAATGGGCCTTTTCTCCCCTCAGTTTAATGCTTATACAGGTGGATCACAAGTTGTATTTGATCATCCTGGGAGCTCACCTTCCTCCGCTGCTATAAATCAGGCATCGAACTCATGCAGCGTGGAATATTTTGAATGTACAGAGCAATCAGGGTCTGTGACTCATAAAGGAGATGAAGGCACCATCTATTCTGAACACACTTCCAACAGAACACCTGAAGTTATAGGGCCTCCTTTTGTTGAAGGAAAAAGATTGCCTCAGAATCAGCACAATCAGCAACCGAAAGTATTAGTTGCAGATTTGATGTGTACAATGTGCAAGCAACTGCTCTTTCATCCCATTGTTCTTAATTGTGGTCATGTATACTGTGAGACTTGTATCATCAACTTATCTGATGAGATGCTTAGATGTCATCTTTGTCAAAGTCCACATCCCAGAGGATTTCCAAAAGTTTGTTTGGCTCTTGACCACTTCTTAGGGGAGCAATTTCCAGAGGAGTATGCACAGCGAAGGGATGCAATTCAACTTGGCCAAATCAAAGTCAAACCTGAGACCACATCTTGTTCATTGCACAATGATAAAGGAGAAAAGATAGCACGGTGGTCTGATCCTGGATTGGCAGTTCACATAAGAGTTGGTTGTGATTTTTGCGGGATGTACCCAATAATTGGGGATAGATATAGATGTGTTGAGTGTAAGGAGAAGATTGGTTTTGATCTTTGTGGTGATTGCTATAAGACCCGCTCAAAGCTTCCAGGCCGATTTAATCAGCAGCACACCCCTGAACACAAGTTCATGCTTGATAAAGAGCTTTCGATAAATACAGTATTTACAGCCGATGATCCTGCTTCGGCTGATGATGGAGAAGATAACCAGAGTGCATCCGAAACCACCAACTGA 1206 0.4146 MENNAFKDENLIENEQEVIAESFICCVCLDLLYKPIVLSCGHVSCFWCVHKSMNGWRESHCPICRHPYYHFPTICQMLHFLLLKIYPIAYKRRENQTREEEEKMGLFSPQFNAYTGGSQVVFDHPGSSPSSAAINQASNSCSVEYFECTEQSGSVTHKGDEGTIYSEHTSNRTPEVIGPPFVEGKRLPQNQHNQQPKVLVADLMCTMCKQLLFHPIVLNCGHVYCETCIINLSDEMLRCHLCQSPHPRGFPKVCLALDHFLGEQFPEEYAQRRDAIQLGQIKVKPETTSCSLHNDKGEKIARWSDPGLAVHIRVGCDFCGMYPIIGDRYRCVECKEKIGFDLCGDCYKTRSKLPGRFNQQHTPEHKFMLDKELSINTVFTADDPASADDGEDNQSASETTN* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00056 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 109 IPR013083 -
Rops4g00056 401 MobiDBLite consensus disorder prediction 381 401 - -
Rops4g00056 401 SUPERFAMILY RING/U-box 304 368 - -
Rops4g00056 401 Pfam RING-type zinc-finger 205 229 IPR027370 -
Rops4g00056 401 FunFam E3 ubiquitin-protein ligase PRT1 192 288 - -
Rops4g00056 401 ProSitePatterns Zinc finger RING-type signature. 220 229 IPR017907 -
Rops4g00056 401 ProSiteProfiles Zinc finger RING-type profile. 25 65 IPR001841 -
Rops4g00056 401 Gene3D - 308 369 IPR043145 -
Rops4g00056 401 ProSiteProfiles Zinc finger RING-type profile. 205 243 IPR001841 -
Rops4g00056 401 ProSiteProfiles Zinc finger ZZ-type profile. 311 375 IPR000433 GO:0008270
Rops4g00056 401 FunFam E3 ubiquitin-protein ligase PRT1 15 111 - -
Rops4g00056 401 SUPERFAMILY RING/U-box 195 246 - -
Rops4g00056 401 SUPERFAMILY RING/U-box 19 75 - -
Rops4g00056 401 SMART zz_5 310 359 IPR000433 GO:0008270
Rops4g00056 401 Pfam Zinc finger, ZZ type 313 351 IPR000433 GO:0008270
Rops4g00056 401 PANTHER UNCHARACTERIZED 16 375 - -
Rops4g00056 401 Pfam Zinc finger, C3HC4 type (RING finger) 23 68 - -
Rops4g00056 401 FunFam E3 ubiquitin-protein ligase PRT1 305 370 - -
Rops4g00056 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 272 IPR013083 -
Rops4g00056 401 SMART ring_2 25 64 IPR001841 -
Rops4g00056 401 SMART ring_2 205 242 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00056 Rops-Chr4 1604608 1618179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00056 10 65 C3H Transcription Factor Family AT1G74990 40.351 3.46e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00056 - - gmx:100787174 553.903