Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00047 ATGGCTTCAAGCACTGTGGAAGGAGGATCAACATTGCCCATGGATGATTATGATGCCTTGCTGTCAACCACTGATGTTGAGCTTCTCAAGCGAGCTTGGCGTAATGAGAAGGCAGCCCCTGAGATTCTTTGCTTTGAATCTGATTTGATTGCCCGCGTCAGAGAACAGATTCAATTGATGGAAGAAACTGTGGAGGAGAAATCTACTGATGGTAATGACCCTCTTTCAGTATCTCTATATCAGATGGACTTGGATAGAACACTGTTTCTGTTAAGATCATATCTTCGTATCCGCATCCAGAAGATTGAAAAGTACATGTTCCACATCCAAAATACTGATGAACTTTGGAACAAGCTATCTACAGACGAGAAAAATTTCACTAGAAGGAAAGGCTATCCTTTTCATTTTATTTCTGACTGCCAATATGACCTAAAACAACATCTGGAGGAGAGTGTGCTATCTAAATTGCCAGAGAATTATCAGTCTGTTCAGAAGCAATCTGTAATTAGTGAAGAGGATGACATGGTTCCAGAACCACAACTAGACACGTTTGTTTTATGTAGAAGTAAAGAATATCTCACAGGCATTCAACTTGAAGATGGACCAGTTGATGACAGGTCAAAACTCTATGAGATGGAGCCTGGTGTCCTCTACTTCATATGTTACAAATCAATAAAGGCACTTGTAGAGAGTGGCAAAATTGAACTAGTTTGA 714 0.4006 MASSTVEGGSTLPMDDYDALLSTTDVELLKRAWRNEKAAPEILCFESDLIARVREQIQLMEETVEEKSTDGNDPLSVSLYQMDLDRTLFLLRSYLRIRIQKIEKYMFHIQNTDELWNKLSTDEKNFTRRKGYPFHFISDCQYDLKQHLEESVLSKLPENYQSVQKQSVISEEDDMVPEPQLDTFVLCRSKEYLTGIQLEDGPVDDRSKLYEMEPGVLYFICYKSIKALVESGKIELV* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00047 237 PANTHER SLD5 PROTEIN 14 237 IPR008591 GO:0006261
Rops4g00047 237 PIRSF GINS_Sld5 1 237 IPR008591 GO:0006261
Rops4g00047 237 Gene3D - 14 227 - -
Rops4g00047 237 FunFam DNA replication complex GINS protein SLD5 12 227 - -
Rops4g00047 237 CDD GINS_A_Sld5 25 153 IPR038749 -
Rops4g00047 237 Pfam DNA replication complex GINS protein SLD5 C-terminus 179 237 IPR031633 -
Rops4g00047 237 Pfam GINS complex protein 52 123 IPR021151 -
Rops4g00047 237 SUPERFAMILY PriA/YqbF domain 181 237 - -
Rops4g00047 237 SUPERFAMILY GINS helical bundle-like 22 167 IPR036224 -
Rops4g00047 237 CDD GINS_B_Sld5 179 237 IPR031633 -
Rops4g00047 237 Coils Coil 50 70 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00047 1 184 Core DNA Replication Machinery Family AT5G49010 58.152 1.33e-64 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00047 K10735 - gmx:100784291 340.502