Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00038 ATGGTTCCTTCTAATTCACTTTTCTATTTTCAGATTCTACTTGCTCTTGCACTTTGCACGCAGGTATCATCTCAGCTTGAAAACTCTCACTCAAAGGTTGAACTGCTTCCTGGCTTTGAAGGACCTCTTCCTTTTGAACTTGAAACAGGGTATGTGGGATTGGGGGAAACAGATGATGACATGCAAGTCTTCTATTACTTTATTAAGTCAGAGAACAACCCTGAGAAAGATCCTCTTATGCTTTGGCTAACTGGTGGACCTGGTTGCTCTTCTTTTTCAGGCCTTGCCTTCCAAATAGGTCCGCTTGGATTCGAAAACAAGGAGTATGATGGGAGCTTGCCGAATTTGGTCTTGAGGCCACATTCGTGGACAAAGGTATGTAGCATTATCTTTGTAGATTTGCCTCTTGGAACTGGCTTCTCGTATGCAAAAAACCTCACTGCTCAACGAAGTGACTGGAAATTAGTTCACCATGCCCATCAATTTCTTAGGATGTGGCTGATTGATCACCTGGAATTTCTTTCAAATGAATTGTACATTGGAGCTGATTCATACTCTGGAATTCCTGCCCCTGCTATTGTTCAAGAAATTTCAAATGGAAATGAAAAAGGTCTCCAACCATGGATAAATCTCCAGGGATATCTGCTGGGGAACCCCATGACAACACGAAGAGAAAACAATGATCAAATCCCATTTGCTCATGGGATGGGACTTATTTCTGACGAACTCTATGCGGTAAAATCGCTGCAGAGAAATTGTAAAGGGGAGTATATGGATATAGATTCCAGAAATGAATTGTGTTTAAGAGATATGCAGTCCTTTGATGAGTGTCTTTCAGGAATTAATAAGTTCTTCATTTTGGATCGCTATTGCGAAGATGATTCACCTCTATGGAGGAGATTTTTGACTCAGAAGTTGAAGTCCTCCCTTAGTTCTCGTCTCACAGTGCCAGAATTAAACTGCCAAATTTATGGTTTTTTCCTCGCCACTAAGTGGGCTAATGATGAGAGTGTTCGCAAGTCACTGCATATTCGAGAGGGAACTATAGGGAGATGGAAACGTTGTTACACTAGTGATTTCAAGCATGAGATCTTCAGTAGCTTTGATTTTCATGTAAATCTCAGTGCAAAAGGCTACCGTTCATTGATATACAGTGGGGATCATGATCTAGCAGTTCCTTTCATGTCAACTCAAGCGTGGATAAGGGCTCTAAACTACTCCATTGTGAATGATTGGAGGCCGTGGCTTGTTTATGACCAAGTTGCAGGATACACAAGGACTTATTCAAATCGAATGACATTTGCAACAGTAAAGGGTGCAGGGCATACAGCTCCTGAGTACAAACCTGAGGAAGGTTTTGCCATGTTCACTAGGTGGCTATCTAATATGCCTTTGTAA 1398 0.4156 MVPSNSLFYFQILLALALCTQVSSQLENSHSKVELLPGFEGPLPFELETGYVGLGETDDDMQVFYYFIKSENNPEKDPLMLWLTGGPGCSSFSGLAFQIGPLGFENKEYDGSLPNLVLRPHSWTKVCSIIFVDLPLGTGFSYAKNLTAQRSDWKLVHHAHQFLRMWLIDHLEFLSNELYIGADSYSGIPAPAIVQEISNGNEKGLQPWINLQGYLLGNPMTTRRENNDQIPFAHGMGLISDELYAVKSLQRNCKGEYMDIDSRNELCLRDMQSFDECLSGINKFFILDRYCEDDSPLWRRFLTQKLKSSLSSRLTVPELNCQIYGFFLATKWANDESVRKSLHIREGTIGRWKRCYTSDFKHEIFSSFDFHVNLSAKGYRSLIYSGDHDLAVPFMSTQAWIRALNYSIVNDWRPWLVYDQVAGYTRTYSNRMTFATVKGAGHTAPEYKPEEGFAMFTRWLSNMPL* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00038 465 FunFam Serine carboxypeptidase-like 11 27 465 - -
Rops4g00038 465 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 449 IPR001563 GO:0004185|GO:0006508
Rops4g00038 465 Gene3D alpha/beta hydrolase 30 464 IPR029058 -
Rops4g00038 465 FunFam Carboxypeptidase 320 464 - -
Rops4g00038 465 FunFam Carboxypeptidase 368 462 - -
Rops4g00038 465 SUPERFAMILY alpha/beta-Hydrolases 36 464 IPR029058 -
Rops4g00038 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 132 142 IPR001563 GO:0004185|GO:0006508
Rops4g00038 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 166 191 IPR001563 GO:0004185|GO:0006508
Rops4g00038 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 432 445 IPR001563 GO:0004185|GO:0006508
Rops4g00038 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 119 131 IPR001563 GO:0004185|GO:0006508
Rops4g00038 465 Pfam Serine carboxypeptidase 37 462 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00038 Rops-Chr4 1066484 1083375 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00038 29 56 Calmodulin-binding Proteins AT2G22960 71.429 8.44e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00038 K16296 - gmx:100780069 795.423