Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00035 ATGATGTTGAATCGTGGGTCAAATGTTTCGGCTGAAGTGGGTGGTTTGGGTGAAAGTGAAGATGAGCTGTATGAGCAGCTATGGAAGGCTTGTGCGGGACCACTGGTGGATGTTCCTCGTGCTGGAGAGAGAGTCTTCTATTTTCCTCAGGGACATATGGAACAATTAGAGGCTTCCACTAATCAGGAACTGAATCAGAGGATTCCTCTGTTGAAACTTCCCACAAAGATCCTCTGTCATGTCGTGAATGTCCATTTACTGGCTGAACAAGAAACAGATGAGGTTTATGCACAGATTACTTTGGTGCCAGAATCTAATCAAGATGAGCCTACAAGCCCTGATCCGTGCACCGGTGAACTTCCGAGACCAACAGTTCACACATTCTGCAAGGTCTTGACTGCATCGGATACCAGCACACATGGTGGCTTCTCTGTTCTCAGGAAACATGCCACAGAATGTCTTCCTGCTTTGGATATGTCCCAACCAACACCAACTCAGGAATTGGTTGCCAAGGATCTTCATGGTTATGAATGGCGTTTCAAGCATATATTTAGAGGTCAGCCACGGAGGCACCTGCTCACGACTGGATGGAGTACTTTCGTGACTTCCAAAAGATTAGTTGCTGGAGATACCTTTGTGTTTTTGAGAGAGGGCAATGGGGAATTACGTGTTGGAGTGAGGCGCCTTGCTCGTCAGCCGAGTAGCATGCCATCATCTGTGATTTCCAGTCAAAGCATGCACCTAGGAGTTCTCGCAACTGCCTCCCATGCTGTTGCAACTCAGACTCTTTTTGTAGTATATTATAAGCCAAGGACGAGTCAGTTCATCATAAGCGTGAACAAGTATTTGGGGGCTATCAACAATAAGTTTAGTGTTGGCATGAGGTTCAAGATGAGGTTTGAGGGGGATGATGCCACTGAGACTGACAAAAGATTTTCGGGTACCATTGTTGGAGTGGAAGATATTTCTCCTCATTGGGTAAATTCAAGATGGCGATCGCTTAAGGTTCAATGGGATGAACCTGCAGCTGTTACAAGACCTGATAGGGTTTCACCATGGGAGATAGAACCCTTTGTAGCTTCTTCTACACCCTCAGTTCAACCTACAGTTGTAAAGAATAAAAGGCCTCGACCACCCAGTGAAATTCCAGACGTTGACACAACATCGGCTGCCTCGGTTTTCTGGGATGCTGGACGGACACAAGCTGATATGACACAACATGGTGTTTTATCCGAAAGCAAACGAAGTGATAATACTGGTATGTGGCATCATAAGCAAACTGATATGAATAGTAAAAGCAACAGCAACACTATGTTCAGGAATAAGACAGAAGGAAGTTGGCTATCTTCTCCCCATTCGAGTTGTCCTTCTCATTTATTCCAGGACGCAACAGATGATAGCAAGAGTGTCTCAGCTTGGCCTGTTTCAAAGCCTCACTCATCCAGATTGAACATCGATCATGTGCCTGATCAAGTTGACAAGGAGAACAAAGTTGAGACTGGTACAATTTATCGATTGTTTGGCATTGACCTTATCGATCATTCAAGGAACTCTCCTACTGTTGAGAAGGCATCTTCACATGTGGTAAATGTACCCAGAGTTACCACTGAGGTTTGTGCCAGCACCTTGTCCAGAACTGATTCTGGTCATAAGTCTGATGTCTCAAAAGCTTCTAAGGAGAGGAAACAAGAACAACAGCAAGTACCATCAAAGGAGACTCAAAGCAAGCAAATTTGTAGCAGAAGTCGCACCAAGGTTCAAATGCAGGGGGTTGCAGTGGGTCGTGCTGTGGATTTGACCATGTTGGATGGATATGATCAACTTATAGATGAATTGGAGGAGTTGTTTGACATAAAGGGACAACTCCAACACAGAAATAAGTGGGAAATCGTGTTTACCGATGATGAAGGGGACATGATGCTTGTGGGAGATGATCCATGGCCTGAATTTTGTAATATGGTGAGAAGAATCTTCATTTGGTCCAGCCAAGATGTGAAGAAGATGAGTTCAGGAAGCAAGCTACCAATCTCTTCAATGGAAGAAGGAACTGTAATAAACTCAGACACAACCGAAACCTGA 2079 0.4468 MMLNRGSNVSAEVGGLGESEDELYEQLWKACAGPLVDVPRAGERVFYFPQGHMEQLEASTNQELNQRIPLLKLPTKILCHVVNVHLLAEQETDEVYAQITLVPESNQDEPTSPDPCTGELPRPTVHTFCKVLTASDTSTHGGFSVLRKHATECLPALDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLREGNGELRVGVRRLARQPSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIISVNKYLGAINNKFSVGMRFKMRFEGDDATETDKRFSGTIVGVEDISPHWVNSRWRSLKVQWDEPAAVTRPDRVSPWEIEPFVASSTPSVQPTVVKNKRPRPPSEIPDVDTTSAASVFWDAGRTQADMTQHGVLSESKRSDNTGMWHHKQTDMNSKSNSNTMFRNKTEGSWLSSPHSSCPSHLFQDATDDSKSVSAWPVSKPHSSRLNIDHVPDQVDKENKVETGTIYRLFGIDLIDHSRNSPTVEKASSHVVNVPRVTTEVCASTLSRTDSGHKSDVSKASKERKQEQQQVPSKETQSKQICSRSRTKVQMQGVAVGRAVDLTMLDGYDQLIDELEELFDIKGQLQHRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFIWSSQDVKKMSSGSKLPISSMEEGTVINSDTTET* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00035 692 Gene3D - 577 669 - -
Rops4g00035 692 MobiDBLite consensus disorder prediction 540 581 - -
Rops4g00035 692 FunFam Auxin response factor 289 362 - -
Rops4g00035 692 CDD B3_DNA 128 228 IPR003340 GO:0003677
Rops4g00035 692 MobiDBLite consensus disorder prediction 367 386 - -
Rops4g00035 692 Pfam Auxin response factor 254 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Rops4g00035 692 FunFam Auxin response factor 576 669 - -
Rops4g00035 692 Pfam AUX/IAA family 553 665 IPR033389 -
Rops4g00035 692 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677
Rops4g00035 692 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Rops4g00035 692 SMART B3_2 128 230 IPR003340 GO:0003677
Rops4g00035 692 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 669 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops4g00035 692 Gene3D - 289 363 - -
Rops4g00035 692 Gene3D - 125 229 IPR015300 -
Rops4g00035 692 Coils Coil 605 625 - -
Rops4g00035 692 FunFam Auxin response factor 126 230 - -
Rops4g00035 692 ProSiteProfiles PB1 domain profile. 581 673 IPR000270 GO:0005515
Rops4g00035 692 SUPERFAMILY CAD & PB1 domains 582 657 - -
Rops4g00035 692 MobiDBLite consensus disorder prediction 549 567 - -
Rops4g00035 692 MobiDBLite consensus disorder prediction 671 692 - -
Rops4g00035 692 SUPERFAMILY DNA-binding pseudobarrel domain 118 257 IPR015300 -
Rops4g00035 692 MobiDBLite consensus disorder prediction 404 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00035 Rops-Chr4 995242 999573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00035 23 674 B3 DNA Binding Superfamily AT4G23980 60.305 0.0 732
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops4g00035 AUX_IAA 6.7e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00035 K14486 - gmx:100779003 1192.56