Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00031 ATGTCTAGCACTGCTGGTCTTGTGATCCCCTGCAATGCTGCTGTTGCATGGGAAGCAGGGAAACCTTTGGTGATAGAACGTGTGGAGGTGGCTCCACCAAAGGCCAAGGAAGTGAGGATCAAGGTCAAATATACCTCCCTTTGCCATACTGATCTTTACTTCTGGGAGGCCAAGGAGCAAACTCCTTTGTTTCCCCGAATTTTGGGCCATGAGGCATCTGGAATTGTGGAGAGTGTTGGAGAAGGAGTCTCAGATCTGCAAATTGGGGATCATGTGCTCCCAGTATTCACTGGTGAATGTGGTGAGTGTCCACATTGCAAATCTGAGGAGAGCAACATGTGTGACCTGTTGAGAATAGATACAGACAGAGGAGTCATGCATAGTGATGGTAAAAGCAGATTCTCCATTAATGGTACTCCAATAAACCACTTTGTTGGCACATCCACTTTTAGTGAATACACTGTGGTACATTCTGGCTGCGTAGCAAAGATCAATCCATTAGCACCTATGGATAAAGTCTGTGTCCTCAGTTGTGGCATCTCAACAGGGTTAGGAGCAACTTTAAATGTAGCAAAACCAAAGAAGGGCTCTTCAGTAGCAGTATTTGGTCTTGGAGCTGTTGGCCTTGCTGCTGCTGAGGGTGCAAGAATTGCTGGTGCATCTAGAATTATTGGAGTTGATTTGAATCCAAATAGGTTTGAGGAAGCCAAAAAATTTGGGGTAACCGAGTTTGTGAATCCAAAGGACTATGATAAGCCGGTTCAAGAGGTGCTTGCACATATGACAAATGGAGGAGTGGATCGAAGTATAGAGTGCACTGGAAACATCAATGCCATGATATCTGCTTTTGAATGTGTTCATGATGGGTGGGGTGTCGCTGTGCTTGTTGGAGTACCCAATAAGGATGCAGTTTTCATGACCAAGCCCATTAATGTGCTCAATGAAAGAACACTCAAGGGAACTTTCTTTGGAAATTACAAGCCCAGGACTGATATCCCATCTGTTGTTGATATGTATATGAATAAGACATTGGAACTGGACAAGTTTATAACCCATAGAGTTCCTTTCTCTGATATCAACAAGGCATTTGAATTAATGTTGAGAGGAGAGGGACTAAGGTGTATCATTAGCATGGATGACCAGAAAAGTAGGCTTTAA 1158 0.4378 MSSTAGLVIPCNAAVAWEAGKPLVIERVEVAPPKAKEVRIKVKYTSLCHTDLYFWEAKEQTPLFPRILGHEASGIVESVGEGVSDLQIGDHVLPVFTGECGECPHCKSEESNMCDLLRIDTDRGVMHSDGKSRFSINGTPINHFVGTSTFSEYTVVHSGCVAKINPLAPMDKVCVLSCGISTGLGATLNVAKPKKGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDLNPNRFEEAKKFGVTEFVNPKDYDKPVQEVLAHMTNGGVDRSIECTGNINAMISAFECVHDGWGVAVLVGVPNKDAVFMTKPINVLNERTLKGTFFGNYKPRTDIPSVVDMYMNKTLELDKFITHRVPFSDINKAFELMLRGEGLRCIISMDDQKSRL* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00031 385 Pfam Zinc-binding dehydrogenase 206 337 IPR013149 -
Rops4g00031 385 SUPERFAMILY GroES-like 4 186 IPR011032 -
Rops4g00031 385 CDD alcohol_DH_plants 9 376 - -
Rops4g00031 385 PANTHER ALCOHOL DEHYDROGENASE 8 376 - -
Rops4g00031 385 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
Rops4g00031 385 Gene3D - 183 321 - -
Rops4g00031 385 SUPERFAMILY GroES-like 328 376 IPR011032 -
Rops4g00031 385 Gene3D - 19 370 - -
Rops4g00031 385 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 341 IPR036291 -
Rops4g00031 385 FunFam Alcohol dehydrogenase class-P 183 321 - -
Rops4g00031 385 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Rops4g00031 385 FunFam alcohol dehydrogenase 1-like isoform X1 19 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00031 Rops-Chr4 857813 861898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00031 12 370 Monolignol Biosynthesis Gene Families AT1G72680 22.493 1.36e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00031 K18857 - egr:104426870 668.692