Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00025 ATGGGTTTGAAGGAACCGTTTGATTGTGTTGTGTGTCTATGTGAATTTTCAGACCATGACAAGATGAGGTTGCTTCCCATGTGTAGCCATGCCTTTCACATGAATTGCCTTGACACATGGCTTCTCTCAAATTCTACATGTCCTCTCTATAAAGCAACTCTCACCAGCTCATATTTCCCTGTGGAGAATCCAATATTTAATATTGACAATCCCTTGGTTCTACCAAATGGGTTCAGAGTCACGGGTGAGGAAGAGAAGGGGTATTCTTCAGATAATCAAAGACTAGAAGAGCAAATTAGTGAGAAAAGGGTGTTTTCTGTGAGACTTGGAAACTTCAGAAATAATGAATTGAAGGGTAGAGAAGTGGTAGAGGATAGTAGTTGTAGTTTGGATGCGAGGAGATGCTACTCCATGGGTTCATATCAGTACGTGGTTCGTGACTCAGATTTGCAAGTGCTCTTATCTCAATCTAATGACTCAGAAATAATGTTGTTGCAAAAGAGAGAATTGAAGCAATGTGTAGGCAAAAAAATATTGAGTCGAATGCCTTCTCCAGCGAGATTCCTAGCATTATTGTCAACCTTTTTTAAGCTTTAA 597 0.397 MGLKEPFDCVVCLCEFSDHDKMRLLPMCSHAFHMNCLDTWLLSNSTCPLYKATLTSSYFPVENPIFNIDNPLVLPNGFRVTGEEEKGYSSDNQRLEEQISEKRVFSVRLGNFRNNELKGREVVEDSSCSLDARRCYSMGSYQYVVRDSDLQVLLSQSNDSEIMLLQKRELKQCVGKKILSRMPSPARFLALLSTFFKL* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00025 198 Pfam Ring finger domain 8 49 IPR001841 -
Rops4g00025 198 CDD RING-H2_EL5-like 8 49 - -
Rops4g00025 198 ProSiteProfiles Zinc finger RING-type profile. 9 51 IPR001841 -
Rops4g00025 198 SUPERFAMILY RING/U-box 5 49 - -
Rops4g00025 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 58 IPR013083 -
Rops4g00025 198 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 4 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00025 Rops-Chr4 710746 711342 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00025 1 155 C3H Transcription Factor Family AT2G18650 37.566 8.04e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00025 - - ccaj:109807149 201.06