Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00004 ATGACAATGAATCCACACCTTCTGAGTTTCACTGGTTCCACAAATGAAGTTCGGTTGAGGAATCAATCGTTGCCAATTCTACAGAATCAGAGATTTGCTGCTGGACCCAGATTTGAAAATTCCTTCTTTGATCAAAGTAGGGAATTAGATTATCTACAGTCTGATCCAATACCTGCTAATACACCGTCAACCTCTACTGTTACTCCTGAGGAGCATTCTCCAGAGGACTGTGATTTCTCTGATGCAGTTTTGAGTTACATCAGTCAGATCCTCATGGAAGAAGACATGGAAGACAAGACATGCATGCTTCAAGATTCTTTAGATCTTCAAGCAGCTGAGAAATCTTTCTATGAAGTGCTGGGTGAAAAATTCCCACCCTCACCAATACAGAATCCAAATTTTATCAATCAAAATGATTGGGTTGGAGGTAATAATTTTTCTATAAGTTATGATAATTGTCCTAGTACTAATGGAGATCTCAGCAGCATTTTTACTGATAACTTTTTGCTCCCAAACTCAGTTGACTTTCCTCCACAAAATCTTCTAGGTAATAGTATTTCACAGTCAACTTACAGCCATTCTAGTAGTGTAATAAGTAGTGTGGAAGGGCCTGTTGACTCTCCAAATAGTATTCTTCAGGTCCCTGATCTGAGTAGTGAGAGTCAATCCATTTCACAATTTCAGAAGGGTGTTGAAGAGGCTAGAAAGTTTCTTCCAAGTGGAAATGGGCTTTTTGCTAATTTGTCACCACTAGATCCAAAAGTGGGAATGGATGAATTGTCAGTTAAGGTGGAGAAGGATGAGGGGGAAAGTGTTCTTGGTGGATCCACAGGAAAGAAACATCCTCACAGGGAAGAGGGGGATGATGAAGAAAATAGAAGTAGTAAGCATGCAGCAATTTATGATGAACCAACATTGCGGTCAAATATGATTGATATGATCCTGCTTCATAGCACAGGGGATGGTAAGGACCATTATGTGGCTCGACGTGAGGCTTTGCAGAATAAGATGAACAAGACAGTACTGTCAAGTAGTCAATCAAAAGCTTCCAAGGGACGTGGTAGGAAGCAAAGTGGGAAAAAGGAAGTGATTGATTTGAGAACACTTCTGGTCCTTTGTGCACAAGCTGTTGCTGCAGATGACTGTAGGAATGCACATGAGTTGCTAAAGCAGATCAGGCAACACTCAAACCCTTTTGGGGATGGAAATCAGAGGTTGGCTCATATATTTGCAGATGGCCTAGAAGCACGCTTGGCTGGTACTGGAAGCCAAATTTATAAAGGACTTGTTAATAAAAGAACAGCAGCTTCTGATATTCTGAAAGCTTATCATCTATACCTTGCTGCTTGCCCTTTTAGGAAAATGTCAAATTTTGTCTCAAATGTTACAATTAGGACATCTTCAGCAAATTCAATGAGGGTTCATGTTATAGATTTTGGTATCCTTTATGGTTTGCAGTGGCCCACATTTATACAGAGACTTTCATGGAGAACCGGAGGACCACCGAAGCTTCGGATTACAGGAATAGACTTCCCACAACCTGGTTTCAGGCCTGCAGAGAGAGTTATTGAAACAGGATGCCGCTTGGCTGCTTATGCTGAGGCCTTTAATGTTCCATTTGAGTATAATGCCATAGCTAAGAAATGGGAAACGATTCAACTTGAGGAACTCAAGATTGATAGGGATGAGTTCCTTGTTGTTACATGTTTCTATAGAGGTAAGAACTTGCTAGATGAATCTGTGGTAGTGGACAGTGCAAGGAATAATTTCCTCAGTTTGATTAGGAAGATCAACCCAAATATATTCATCCATGGCATTATGAATGGGGCATTTAATGCCCCTTTCTTTGTTACACGATTCCGGGAGGCATTGTTTCACTATTCATCACTATTTGATATGCTTGAAACTATTGTGCCTCGAGAGGACTGGGAGAGGATGTTGATTGAGAAAGAGATATTTGGGAGGGAAGCATTGAATGTGATAGCTTGTGAAGGCTGTGAAAGAGTAGAGAGGCCTGAGACATATAAGCAGTGGCAAGCACGTATCCTACGGGCTGGTTTTTTGCAACAACCGTTTGATCGTGAGACTGTGAAGATGGCAATGGAGAAAGTAAGGTCTGGTTATCACAAGGATTTTGTAATTGATGAAGATAGCCATTGGTTGTTGCAAGGTTGGAAGGGGCGGATCATTTATGCCCTTTCTTGTTGGAGACCTGCATGA 2220 0.4117 MTMNPHLLSFTGSTNEVRLRNQSLPILQNQRFAAGPRFENSFFDQSRELDYLQSDPIPANTPSTSTVTPEEHSPEDCDFSDAVLSYISQILMEEDMEDKTCMLQDSLDLQAAEKSFYEVLGEKFPPSPIQNPNFINQNDWVGGNNFSISYDNCPSTNGDLSSIFTDNFLLPNSVDFPPQNLLGNSISQSTYSHSSSVISSVEGPVDSPNSILQVPDLSSESQSISQFQKGVEEARKFLPSGNGLFANLSPLDPKVGMDELSVKVEKDEGESVLGGSTGKKHPHREEGDDEENRSSKHAAIYDEPTLRSNMIDMILLHSTGDGKDHYVARREALQNKMNKTVLSSSQSKASKGRGRKQSGKKEVIDLRTLLVLCAQAVAADDCRNAHELLKQIRQHSNPFGDGNQRLAHIFADGLEARLAGTGSQIYKGLVNKRTAASDILKAYHLYLAACPFRKMSNFVSNVTIRTSSANSMRVHVIDFGILYGLQWPTFIQRLSWRTGGPPKLRITGIDFPQPGFRPAERVIETGCRLAAYAEAFNVPFEYNAIAKKWETIQLEELKIDRDEFLVVTCFYRGKNLLDESVVVDSARNNFLSLIRKINPNIFIHGIMNGAFNAPFFVTRFREALFHYSSLFDMLETIVPREDWERMLIEKEIFGREALNVIACEGCERVERPETYKQWQARILRAGFLQQPFDRETVKMAMEKVRSGYHKDFVIDEDSHWLLQGWKGRIIYALSCWRPA* 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00004 739 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 304 731 IPR005202 -
Rops4g00004 739 ProSiteProfiles GRAS family profile. 357 737 IPR005202 -
Rops4g00004 739 MobiDBLite consensus disorder prediction 337 352 - -
Rops4g00004 739 Pfam GRAS domain family 366 737 IPR005202 -
Rops4g00004 739 MobiDBLite consensus disorder prediction 337 359 - -
Rops4g00004 739 MobiDBLite consensus disorder prediction 53 76 - -
Rops4g00004 739 MobiDBLite consensus disorder prediction 56 70 - -
Rops4g00004 739 MobiDBLite consensus disorder prediction 265 301 - -
Rops4g00004 739 MobiDBLite consensus disorder prediction 265 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00004 Rops-Chr4 143387 146657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00004 75 738 GRAS Transcription Factor Family AT2G37650 54.399 0.0 683
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops4g00004 GRAS 1.7e-112 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00004 - - gmx:100780785 1152.5