Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02823 ATGTCGTTGAACATGAAAACCCTAACCCAAGCATTGGCGAAAACCGCCGCGGTAATTGAGAAGAAAGTGCAGACGACGGTGCAGGATGTGACAGGACCGAAGCCCCTTCAGGACTTCGAGATCCTTGAGCAGATCGGCTCTGCAGGGCCTGGTCTCGCATGGAGGTTGTACTCGGGCAGGGCCCGTGATCCATCGCGGCAGCACCAGTATCCGGTTGTTTGTGTGTGGGTATTGGACAAGCGGGCTCTTTCCGAGGCCCGAATGCGTGCTGGGCTCACCAAGGCCGCTGAGGATTCGTTTTTAGATTTGGTTCGGACAGATGCGGCTAAGCTCGTGCGGCTCAGGCATCCTGGAGTGGTCCATGTTGTACAGGCCCTCGACGAGAGTAAGAATGCAATGGCAATGGTTACCGAACCATTGTTTGCTTCCGTTGCTAATACTCTTGGCAATGTCGACAATATTCCAAATGTTCCAAAAGACCTCAGGGGAATGGAAATGGGACTGTTGGAGGTGAAGCATGGTTTACTTCAGATAGCAGAATCCCTGGACTTTCTCCACAACCATGCTCATCTTGTTCATCGAGCTATATCACCTGAGAATATTCTTATCACCTTGAGTGGAGCCTGGAAACTTGGTGGATTTGGTTTTGCAATCTCCACTTCTCAGTCCTCTGGTGACTCATCTAATCTACAAGCCTTCCATTATGCTGAATATGATGTTGAAGACTCTGTTTTGCCGCTTCAGCCATCACTTAATTACACTGCTCCTGAGCTGGTGAGGAATACCACTTCTTCAGCTGGGTGCTCTTCTGATATTTTCAGTTTTGGATGCCTTGCCTACCATTTAATTGCTCGCAAGCCTTTGTTTGACTGCCACAACAATGTGAAGATGCACATGAATACCTTGACTTACTTATCCAGTGATGCTTTCTCATCTATCCCATCGGAATTGGTTCCTGACTTGCAAAGAATGCTTTCTCCAAATGAGTCTTTCAGGCCAACTGCAATGGATTTTACAGGCTCACAATTTTTTCGGAATGATACTAGATTGCGTGCTCTTCGTTTCCTTGACCACATGCTTGAAAGAGATAACATGCAGAAGTCAGAGTTCTTAAAAGCTTTGTCAGATATGTGGAAAGATTTTGATTCCCGTGTATTGAGATACAAGGTCCTTCCACCACTTTGTGCAGAACTTAGGAATGTGGTGATACAGCCAATGATTCTACCGATGGTTCTAACCATTGCAGAATCTCAGGACAAGAATGATTTTGAGCAATCAACACTTCCAGCTCTTGTCCCTGTATTAAGTACTGCTGCTGGTGAGACACTGTTACTACTTGTGAAGCATGCTGAGCTTATAATAAACAAGACTAGTCAAGAGAATTTAGTTTCACATGTTCTTCCAATGATTGTTCGGGCCTATGATGATACTGATGCACGTTTACAAGAAGAGGTCCTGAAAAAATCCGTATCCCTTGCCAAGCAACTTGATTCCCAGCTGGTGAAACAAGTGATTTTACCCCGTGTTCATGGACTAGCACTTAAAACTACAATTGCTGCGGTTAGAGTCAATGCTTTGCTGTGTCTAGGAGACATGGTTAACCGACTTGATAAACATGCTGTCCTGGACATCTTGCAAACTATTCAGCGATGTACTGCTGTTGACCGTTCTCCTCCAACCCTCATGTGTACCCTTGGGGTTGCGAATTCTATTTTTAAGCGGTATGGAGTAGAATTTGTTGCGGAGCATGTTCTTCCATTGCTTATGCCCCTCCTGACTGCTCAACAACTGAATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCAGAAGATAGAAGAGAAGCGAGGAGTGGCTGTGACTGATTCTGGATTCCCAGAGGTAAAACTATCTCCTGCTGTTAATGGCCTTCAAACAGAAGCCCTGAGGACAAGCAGCAGTACTGTTGCTACTCCAACAAAAAGCAGCTCCTCTTGGGATGAAGATTGGGGTCCCAAAACAAAGGGAATTACCTCTACTGTCCAGAATTCTATTGATACATCCAGTCAATTGGTGGCAGGCAACCCTGTGGGTCAAGTAACATCTTTACAAAAGCATTTGCCCTTATCTGGTATCTCTGATCAGCAGACACCCAAGTCATGTCCCTCAGTAGACATAGAGTGGCCGCCTCGTGCATCTTTTGGTGTCACCTCACAATTTGGTGATACTGAAAGGCAGACGATTGCAGCGGGAACCTCGTCCTCATCTAATCTTGAAGATGATGATCCTTTTGCTGATTGGCCTCCACGTCCTAGTGGCTCATTATCTGGTGGATCCGGAATTTCCAACAATGGTGCTTTAGGAATGCCACTAAACAAATTAGGGTCTAATTCAATGACAAGCAATCTGGGTCTTCAAACAAGAAACAGTTGGTCTATTAATTCCCAAAGTTCTGCGGAGTCTGTCAGTTTGAACCAAAGGAATGCTAGTTCAGGCATCAGTAGCCTGAATAGGGGCCTTGAACCTCATAATTCTCTCGGGTTCCTAAAACAAAGTCATGCTTTTCCAGCATTGGATGTTTCAAATAACAGCATTAAGTCAACAGATCTTGGATCAATATTTTCTTCCAGCAAAAATGAACAGATTGCACCTAAACTCGCGCCACCCCCTTCAACCACAGTGGGTAGAGGAAGGGGAAGAGGGAGGGGACCTGCTTCAACCACTCGGCCCTCTCATACCAAGTCAAATGCTGAGCAGCCACCCCTTTTGGATTTGTTGGGGAAGAAATTGCAGAACTTGCCAGGCAACATCTGTAAGGGACGTCTACGCTGTGTAAAGGCAGCAGCTCCCGCCGCCGGAGGAACAGAGCAAGAGAAGAACAGGCCGCCGCCGGGGATGATGATGGTGGAGGAAGGAAGGGTTTTCGAGGTTCCTGGACCAACGGAGCATTACGTGCCAGAAGGTCCTCCTCATTCGCCGCGTGTTGTGGTTGTTGAAGAATCGCCGCCGCCAGTGGTTCATGTTCCGCAGGATCCGCCGTTGCCGGAAATGTGTGGTCCTCCGGAATCGGAAATGCAGTACCATCCAGAGGTGAGGAAAATGCAAGCGGTTAGAGGGGAGAGAGTGAGGATTTTGAAGAAGCCTAACGGTGATTACTCGCCGAAAGATATCACCGGCAAGAAAACCGGCGTTCAGACCCAAAGGATTACATAG 3204 0.4685 MSLNMKTLTQALAKTAAVIEKKVQTTVQDVTGPKPLQDFEILEQIGSAGPGLAWRLYSGRARDPSRQHQYPVVCVWVLDKRALSEARMRAGLTKAAEDSFLDLVRTDAAKLVRLRHPGVVHVVQALDESKNAMAMVTEPLFASVANTLGNVDNIPNVPKDLRGMEMGLLEVKHGLLQIAESLDFLHNHAHLVHRAISPENILITLSGAWKLGGFGFAISTSQSSGDSSNLQAFHYAEYDVEDSVLPLQPSLNYTAPELVRNTTSSAGCSSDIFSFGCLAYHLIARKPLFDCHNNVKMHMNTLTYLSSDAFSSIPSELVPDLQRMLSPNESFRPTAMDFTGSQFFRNDTRLRALRFLDHMLERDNMQKSEFLKALSDMWKDFDSRVLRYKVLPPLCAELRNVVIQPMILPMVLTIAESQDKNDFEQSTLPALVPVLSTAAGETLLLLVKHAELIINKTSQENLVSHVLPMIVRAYDDTDARLQEEVLKKSVSLAKQLDSQLVKQVILPRVHGLALKTTIAAVRVNALLCLGDMVNRLDKHAVLDILQTIQRCTAVDRSPPTLMCTLGVANSIFKRYGVEFVAEHVLPLLMPLLTAQQLNVQQFAKYMLFVKDMLQKIEEKRGVAVTDSGFPEVKLSPAVNGLQTEALRTSSSTVATPTKSSSSWDEDWGPKTKGITSTVQNSIDTSSQLVAGNPVGQVTSLQKHLPLSGISDQQTPKSCPSVDIEWPPRASFGVTSQFGDTERQTIAAGTSSSSNLEDDDPFADWPPRPSGSLSGGSGISNNGALGMPLNKLGSNSMTSNLGLQTRNSWSINSQSSAESVSLNQRNASSGISSLNRGLEPHNSLGFLKQSHAFPALDVSNNSIKSTDLGSIFSSSKNEQIAPKLAPPPSTTVGRGRGRGRGPASTTRPSHTKSNAEQPPLLDLLGKKLQNLPGNICKGRLRCVKAAAPAAGGTEQEKNRPPPGMMMVEEGRVFEVPGPTEHYVPEGPPHSPRVVVVEESPPPVVHVPQDPPLPEMCGPPESEMQYHPEVRKMQAVRGERVRILKKPNGDYSPKDITGKKTGVQTQRIT* 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02823 1067 SMART serkin_6 39 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g02823 1067 Pfam Protein kinase domain 104 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g02823 1067 SUPERFAMILY ARM repeat 345 607 IPR016024 -
Rops3g02823 1067 MobiDBLite consensus disorder prediction 706 725 - -
Rops3g02823 1067 MobiDBLite consensus disorder prediction 1042 1067 - -
Rops3g02823 1067 MobiDBLite consensus disorder prediction 747 781 - -
Rops3g02823 1067 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 36 916 - -
Rops3g02823 1067 Gene3D Phosphorylase Kinase; domain 1 37 138 - -
Rops3g02823 1067 CDD PK_SCY1_like 45 346 - -
Rops3g02823 1067 ProSiteProfiles Protein kinase domain profile. 39 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g02823 1067 Gene3D Transferase(Phosphotransferase) domain 1 160 347 - -
Rops3g02823 1067 MobiDBLite consensus disorder prediction 875 916 - -
Rops3g02823 1067 MobiDBLite consensus disorder prediction 645 676 - -
Rops3g02823 1067 Gene3D - 348 621 IPR011989 -
Rops3g02823 1067 SUPERFAMILY Protein kinase-like (PK-like) 34 348 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02823 Rops-Chr3 59672905 59698218 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02823 957 1063 Lipid Metabolism Gene Families AT1G74720 41.406 6.31e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL2 Rops3g02823 Pkinase 2.2e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02823 K17541 - gmx:100796211 1546.56