Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02815 ATGACCTTTAATTCAAGCAACCTGCTACTTATTTATTTCTTTTCCTCTCTTTTCTCTTCTCCTTCCTTTTCCATCATCCATTTCAGTTCCATTTATGTGAAAAAAGGAGGAGGAAGAATTGGCTCAATCACTATGGAATCCTGCAATTGTATTGACCCGCAATTTCCAGCGGATGAATTATTGATGAGATACCAATATATCTCGGATTTCTTCATTGCCATTGCTTATTTCTCAATCCCTCTTGAGCTTATCTACTTTGTTAAGAAATCAGCAGTGTTTCCATATAGATGGGTCCTTGTTCAGTTTGGTGCTTTCATAGTTCTATGTGGAGCAACACATCTAATTAATTTATGGACCTTCACTATTCATACAAGAACTGTGGCAATTATAATGACCATTGCTAAAGTCTTAACTGCTGTGGTATCATGTGCAACTGCTCTTATGCTTGTACATATCATTCCCGATTTATTAAGTGTTAAAACTAGGGAACTATTTTTGAAGAACAAGGCTGCAGAACTTGATAGAGAAATGGGCCTGATTCGCACACAGGAAGAAACTGGTCGACATGTTAGGATGTTGACTCATGAGATTAGAAGTACTCTTGATAGACACACAATACTGAAAACGACTCTTGTTGAACTTGGTAGAACTTTGGCACTGGAGGAATGTGCCTTATGGATGCCAACACGTACTGGCTTGGAGCTTCAACTCTCTTACACATTGAGACAGCAGAACCCAGTTGGATATACAGTACCCATTAATCACCCTGTGATCAACCAAGTATTTAGTAGTAACCGTGCAGTGATAATTTCACCTAATTGCCCAGTTGCTAGATTACGACCTCATGCTGGAAAATACATGCCTGGGGCGGTAGTAGCTGTTCGGGTTCCTCTCCTGCATCTTTCTAATTTCCAGATATATGATTGGCCTGAGGTTTCAACAAGAAGCTATGCTTTGATGGTTTTGATGCTTCCATCAGATAGTGCCAGACAATGGCATGTACATGAGTTAGAGCTGGTTGAGGTAGTTGCTGATCAGGTGGCCGTTGCACTTTCGCATGCTGCAATCTTAGAAGAGTCAATGAGGGCAAGGGATCTGCTCATGGAGCAGAATGTTGCACTTGATCTGGCAAGAAGAGAAGCGGAAACTGCAATTCGTGCTCGCAATGACTTTTTGGCTGTTATGAACCATGAGATGAGAACTCCCATGCATGCAATTATTGCACTCTCTTCATTGTTACAGGAAACTGAGCTGACTGCTGAGCAACGTTTGATGGTGGAGACAATCTTGAAAAGCAGCAATTTATTAGCTACTCTCATCAATGATGTTTTGGATCTTTCACGGCTTGAAGATGGCAGTCTTCAACTCGAAGCTGCAACATTTAACCTTCATTCATTGTTCAGAGAGGTCCTTAACTTGATTAAGCCTGTTGCATCTGTTAAAAAGTTGTCACTGACTTTACATTTAGCATCAGATTTGCCAGTGTATGCCATTGGTGATGAAAAACGTCTCATGCAAATTCTTCTGAATGTTGTTGGTAATGCCATGAAGTTCTCAAAAGAGGGCAGCATTTCCATCACCGCTTTTGTTGCAAAACCTGAATCCTTCAGGGATGCTAGAATTCCTGACTTTCTACCAGTGCCAAGTGATAGCCACTTTTATTTGAGAGTACAGGTAAAAGATTCAGGATCAGGAATTAATCCACAAGATATCCCGAATTTATTCACTAAGTTTGCACAAAACCAATCATTAGCAACAAGAAATCCTGCTGGAAGTGGACTTGGCCTTGCAATTTGTAGGAGGTTTGTAAATCTCATGGAAGGGCATATTTGGATTGAGAGCGAAGGTGTTGGCAAAGGATGTACAGTCACTTTTGTCGTAAAACTTGGAATCCCTGACCGGTCAAATGAATATAAACTACGTTTTGTACCTAAAGTTCCAGTAAATCATGGATCTACAAACTTTGCAGGGCTCAAAGTTCTTGTCATGGATGATAATGGGGTTAGCAGGACAGTAACAAAGGGGCTTCTTATGCATTTAGGATGTGATGTCACAACTGTAAGCTCAAGTGAAGAATGCCTGCGTGTTGTTTCCATGGAACACAGAGTGGTCTTCATGGATGTTTGTACAGGGGTAGATGGTTATGAACTAGCAGTACGAATACAAGAGAAGTTTACAAAACGTCAAGATAGACCACTCATAGTTGCTCTTACTGGAAACACCAACAAGGTGACAAAAGAGAACTGTATGAGGGTTGGTATGGATGGCCTTATATTGAAACCTGTTTCTGTTGACAAAATGAGGGGTGTTTTATCAGAACTCCTGGAGCGTCGAGTTCTATTTGAAAACGTTTAA 2355 0.4068 MTFNSSNLLLIYFFSSLFSSPSFSIIHFSSIYVKKGGGRIGSITMESCNCIDPQFPADELLMRYQYISDFFIAIAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFTIHTRTVAIIMTIAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPINHPVINQVFSSNRAVIISPNCPVARLRPHAGKYMPGAVVAVRVPLLHLSNFQIYDWPEVSTRSYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTAEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLEAATFNLHSLFREVLNLIKPVASVKKLSLTLHLASDLPVYAIGDEKRLMQILLNVVGNAMKFSKEGSISITAFVAKPESFRDARIPDFLPVPSDSHFYLRVQVKDSGSGINPQDIPNLFTKFAQNQSLATRNPAGSGLGLAICRRFVNLMEGHIWIESEGVGKGCTVTFVVKLGIPDRSNEYKLRFVPKVPVNHGSTNFAGLKVLVMDDNGVSRTVTKGLLMHLGCDVTTVSSSEECLRVVSMEHRVVFMDVCTGVDGYELAVRIQEKFTKRQDRPLIVALTGNTNKVTKENCMRVGMDGLILKPVSVDKMRGVLSELLERRVLFENV* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02815 784 Pfam His Kinase A (phospho-acceptor) domain 388 452 IPR003661 GO:0000155|GO:0007165
Rops3g02815 784 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 373 453 IPR036097 GO:0000155|GO:0007165
Rops3g02815 784 CDD REC_ETR-like 658 771 - -
Rops3g02815 784 SUPERFAMILY CheY-like 654 777 IPR011006 -
Rops3g02815 784 SMART gaf_1 202 361 IPR003018 GO:0005515
Rops3g02815 784 Pfam Response regulator receiver domain 660 768 IPR001789 GO:0000160
Rops3g02815 784 SUPERFAMILY GAF domain-like 202 363 - -
Rops3g02815 784 Gene3D - 180 352 IPR029016 -
Rops3g02815 784 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 45 777 - -
Rops3g02815 784 SMART HisKA_10 387 452 IPR003661 GO:0000155|GO:0007165
Rops3g02815 784 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 499 629 IPR003594 -
Rops3g02815 784 Gene3D - 652 784 - -
Rops3g02815 784 Gene3D - 452 636 IPR036890 -
Rops3g02815 784 Pfam GAF domain 202 351 IPR003018 GO:0005515
Rops3g02815 784 PRINTS Bacterial sensor protein C-terminal signature 590 608 IPR004358 GO:0016310|GO:0016772
Rops3g02815 784 PRINTS Bacterial sensor protein C-terminal signature 555 569 IPR004358 GO:0016310|GO:0016772
Rops3g02815 784 PRINTS Bacterial sensor protein C-terminal signature 573 583 IPR004358 GO:0016310|GO:0016772
Rops3g02815 784 ProSiteProfiles Histidine kinase domain profile. 394 631 IPR005467 -
Rops3g02815 784 ProSiteProfiles Response regulatory domain profile. 659 775 IPR001789 GO:0000160
Rops3g02815 784 PIRSF Ethylen_sen_hybr_HK 23 782 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Rops3g02815 784 FunFam Ethylene response sensor 180 352 - -
Rops3g02815 784 Gene3D - 353 451 - -
Rops3g02815 784 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 441 629 IPR036890 -
Rops3g02815 784 FunFam Ethylene receptor 652 784 - -
Rops3g02815 784 SMART REC_2 658 771 IPR001789 GO:0000160
Rops3g02815 784 FunFam Ethylene receptor 1 452 634 - -
Rops3g02815 784 FunFam Ethylene receptor 1 354 450 - -
Rops3g02815 784 CDD HisKA 385 448 IPR003661 GO:0000155|GO:0007165
Rops3g02815 784 SMART HKATPase_4 499 631 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02815 Rops-Chr3 59520444 59526040 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02815 45 784 Miscellaneous Gene Families AT1G66340 82.749 0.0 1255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops3g02815 GAF 1e-15 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02815 K14509 - gmx:100795340 1358.58