Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02804 ATGTTTCTATGGGAATCAGTGATGTCTTCAGACTCAGACTGTGACTCAGATTCTGGTTGTTGTTGTTCGGGTAGATCAGCTGAATTGAAGCTCTATAGAGCCTTCATATTCTCTGTTCCCATTTTCTTCACTTTGATTCTGCTGTTTCTATTCTACGTGTTCTATCTTCGACCCAGAAGGGTAGATTGGTCTTCTCTTAGGATGAGACCCTTCACTGTTGCACAGGACCATAACAATGCCGAATCCACACCTGGTTTGGGGTTGAAGAAAGAATTGAGAGAGATGTTGCCCATTATTGTCTACAATGAAAGCTTCTTTGTCAAAGATACTCAATGCTCAGTATGCCTCTTGGACTACCAACCAGAGGATAGACTTCAACAGATACCTGCATGTGGCCATACATTTCACATGAGCTGCATTGATCTTTGGCTTGCCAACCACACCACCTGCCCTCTTTGCCGCTTGTCCCTACTAACTACTGCTAAATCTTCAACAGAGACATCCAATATGCAGAGGCAATGGAGCAATGAAGAAACACAGGAGCCACTGAGCAATGAAGAAACACAAGCCATGGAATTCTCTGACTCAAGTTCTACTAGGCATCTAGAAAACACTGTCCTCCAGAACAGCTCTGGAGAAGTTGCAATCAGTGCTCACTGCATTGATGTGGAAGGGCAAAATGTGTGA 687 0.4396 MFLWESVMSSDSDCDSDSGCCCSGRSAELKLYRAFIFSVPIFFTLILLFLFYVFYLRPRRVDWSSLRMRPFTVAQDHNNAESTPGLGLKKELREMLPIIVYNESFFVKDTQCSVCLLDYQPEDRLQQIPACGHTFHMSCIDLWLANHTTCPLCRLSLLTTAKSSTETSNMQRQWSNEETQEPLSNEETQAMEFSDSSSTRHLENTVLQNSSGEVAISAHCIDVEGQNV* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02804 228 Pfam Ring finger domain 111 154 IPR001841 -
Rops3g02804 228 PANTHER OS11G0150450 PROTEIN 43 208 - -
Rops3g02804 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 159 IPR013083 -
Rops3g02804 228 FunFam RING-H2 finger protein ATL7 77 159 - -
Rops3g02804 228 MobiDBLite consensus disorder prediction 166 198 - -
Rops3g02804 228 CDD RING-H2_EL5-like 111 154 - -
Rops3g02804 228 SUPERFAMILY RING/U-box 96 159 - -
Rops3g02804 228 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Rops3g02804 228 SMART ring_2 112 153 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02804 Rops-Chr3 59348116 59351993 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02804 23 195 C3H Transcription Factor Family AT4G10150 56.044 3.53e-64 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02804 K19039 - gmx:100794211 270.396