Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02790 ATGGAAGAACCACCTATCACCGCCGACTCATCCACCTCTTTGACAGAAACGTCGTCGTTGCCCGACCTAAACGAATTAACAATTCATGATAATGACGATCATCTGGAGTTGTTGGACGAATCAGACGTCAAAGCCATTACCTCCGGCGACACTCCATACACCTCGGTGGCCACCTTTGAAGACCTGAATCTCTCATCAGAACTGCGGAAAGGAATCTATGTGGAGATGAAATTCCATAAACCTAGCAAAATTCAAGCCATAAGCTTGCCCATGATCCTTACCCCTCCTCATAGGGATTTGATTGCACATAATGGTTCTGGCAAGACCACTTGTTTTGTGCTTGGGATGCTTAGTCGTGTGGATCCCAATTTGAAAGAACTTCAAGCTCTCTGCATTTGCACCACCAGTGTGTTAGCTAATCAAAACTATGAGGTTCTGCAAAAGATGGGAAAGCACACGGGGATCAGTTCGGAACGTGCTGTGCCAGAGGACGACATAGCGACACAAGATGCTATTACGGCTCAAGTTGTTATTGGAACTCCTGGCACTGTCAAGAGGTTGATCTTACATACGAAACTCGGGTGA 585 0.4632 MEEPPITADSSTSLTETSSLPDLNELTIHDNDDHLELLDESDVKAITSGDTPYTSVATFEDLNLSSELRKGIYVEMKFHKPSKIQAISLPMILTPPHRDLIAHNGSGKTTCFVLGMLSRVDPNLKELQALCICTTSVLANQNYEVLQKMGKHTGISSERAVPEDDIATQDAITAQVVIGTPGTVKRLILHTKLG* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02790 194 Gene3D - 39 193 IPR027417 -
Rops3g02790 194 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 57 86 IPR014014 GO:0003724
Rops3g02790 194 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 89 194 IPR014001 -
Rops3g02790 194 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 192 IPR027417 -
Rops3g02790 194 PANTHER RNA HELICASE 44 190 - -
Rops3g02790 194 Pfam DEAD/DEAH box helicase 83 190 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02790 Rops-Chr3 59219187 59220269 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02790 39 192 Eukaryotic Initiation Factors Gene Family AT3G19760 34.545 8.91e-14 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02790 K18655 - vvi:100257270 225.713