Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02785 ATGGAGTTTGATTTGAATCAAGAGCCTTTTGACCCAACTCATGGTTCAGTACTTGAATTTGATTCTATGTTGGATGAACTAGAATCTGGTGGTCATGGGCATATACAGGACAGAATTAGACACCTTGAGGCAGTAACTTCCAGAGCTCGGCAGCGCCGGGCGTGGCCACTGGTTCACTCTCCGATTCAGATAACCAATTTTACAGGAGAAGCCACCACAACAGGTGAGGCTCAAGGTGAAGGAAGGGAGCAGCATGAAGTTGTTGAGGAAGGAATAGTTGAAAATGGGAAAGGGGGAAGAAATAAAGGTACCCATTTGATAGCTAAAGCTTTAGGGGTGGAAGAAATAGATGCAAGTAATGGAGGTGGCAGAACTGGGAATTTTTATGATTGTAATATATGCTTGGACACAGCAAGATATCCTGTTTTGACTTGTTGTGGTCACTTGTTTTGTTGGCCATGCTTCTATCAGTTGCCATATGCTTATTCAAATGCTAAGGAATGTCCTAATTGTAAAGGAGAGGTAAATGAAACTGACATTATTCCGATTTATGTCAATGCAAGTGATAAAGGGGATTGTCAGTTGGAATCAAAAGAAGCTGGTTTGAAGGTTCCTCCGCGACCTAAGGCACCTAGAATTGAGGGTATTCGGCAGCAGCTAATAAACCAGGGAACACCTTCTGCTATTGTCCAAAACATTCAGAGGTTTAATAATCTTATTGGTGGATTTGGAGGGCAAGTTCAGTCAGAAAGCCCCAATACTGCTGCAACTGATAGAAATAATGTTTTGCACATTCAATCTCGCCCACAGATGGGCAATAATCGACGTACTGGTTCTCGTCCAATTTCAAGGTTGTTAGTGCAAAGTGCTGATTCATTTTCATCCTTTTCATCAGCATTAAATTATGGACAAAGAATAGTTGAGGACTTTGAATCATATATGCATAGCCTCCACATTGGAGGAAGCAGGCAGTTAAATGGTCATGCTGTTAATAGAAATTCAACTTCTAGAGTTGCTGCTACAAATCGGTCAGAGAGTCTTGCTCGAGATGTTTCTGCAACCAGTTCTGCAGCTGCGGCTTTTGTGTCTTCTATAAATAGGACTGTTGACGCAATCACTGGTATCGGCTCAGAAATGCAGACAACAGATGGTAATTTACAGATTGGTCCTTTAGACCCTTCATCTTACAATAGAAGAAGAAGAAGAAGAAGAAATGTATCAAGACAAGCTTCAAATGGGCCCGGAAGAAGAAGATTGAGATGA 1263 0.4165 MEFDLNQEPFDPTHGSVLEFDSMLDELESGGHGHIQDRIRHLEAVTSRARQRRAWPLVHSPIQITNFTGEATTTGEAQGEGREQHEVVEEGIVENGKGGRNKGTHLIAKALGVEEIDASNGGGRTGNFYDCNICLDTARYPVLTCCGHLFCWPCFYQLPYAYSNAKECPNCKGEVNETDIIPIYVNASDKGDCQLESKEAGLKVPPRPKAPRIEGIRQQLINQGTPSAIVQNIQRFNNLIGGFGGQVQSESPNTAATDRNNVLHIQSRPQMGNNRRTGSRPISRLLVQSADSFSSFSSALNYGQRIVEDFESYMHSLHIGGSRQLNGHAVNRNSTSRVAATNRSESLARDVSATSSAAAAFVSSINRTVDAITGIGSEMQTTDGNLQIGPLDPSSYNRRRRRRRNVSRQASNGPGRRRLR* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02785 420 SMART ring_2 131 171 IPR001841 -
Rops3g02785 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 186 IPR013083 -
Rops3g02785 420 MobiDBLite consensus disorder prediction 380 420 - -
Rops3g02785 420 ProSiteProfiles Zinc finger RING-type profile. 131 172 IPR001841 -
Rops3g02785 420 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 106 301 IPR045103 GO:0005783|GO:0006511|GO:0061630
Rops3g02785 420 Pfam Zinc finger, C3HC4 type (RING finger) 130 177 - -
Rops3g02785 420 SUPERFAMILY RING/U-box 127 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02785 Rops-Chr3 59146130 59148065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02785 71 367 C3H Transcription Factor Family AT3G58030 32.174 7.17e-33 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02785 - - cam:101488454 426.787