Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02784 ATGCATTTGAAGAAAGAAGAAGATCATGGAAAAGCCTCCATCCAATTGGGGTTAGGCTTCGACACCACCTTATCAATTGGTCCAGTTATTACTAAACAAAGAGATCAACACCAACTACAAACAGAAAAGCAGAAGAACAAACACACACACAATAACAGTAGTGACATCACTACTGAAGAAGACCATGAAGCTATAATTGAATCCTTTAGTCCCTCTCTCAAAGCCAATAACAACACAGTTCTGGAGCTTGATCTTCTTCCTCACACACCAGCCTCTTTCCCATGGCACCCTCCTTTGGAAAAAGCTGCTACTTCTTCAAGGGGCTTTCAGATGGATCTCAGCAGAAGAGGGAGTGTGAGTGGTAAGGGTCATGATCAAAGAGCAAGTGATGAAGATGAGAATAATGGTGGCAGCACCAGGAAGAAGCTAAGGCTTTCTAAGGAACAATCTGCTTTCCTTGAAGAGAGCTTCAAAGACCACAGCACTCTTAACCCTAAACAAAAGATTGCTCTTGCCAAACAACTCCATCTTCACCCTCGCCAAGTGGAAGTTTGGTTTCAAAACAGAAGAGCAAGGACCAAGTTGAAGCAGACAGAGATGGACTGTGAGTACTTGAAGAGGTGCTGTGACACACTTAAAGAAGAGAATAGAAGGCTTCAGAAGGAGCTTCAAGAATTGAGGGCTTTGAAGACTTCAAACCCATTCTATATTCAGTCACCAGCTACTACCTTGACCATGTGCCCATCTTGTGAGCGTGTTGCCACCAATTCAATCTCCAATAATACAGGAGCCTCTACTACCACTGCCAAAACCATTGATGAACCACCCTCCAAAGCCATTGGATTCCCCAGGTTCAATCCATTCCACCCCACCAATCCACAGCATCTTGAATTAAATTGA 900 0.4367 MHLKKEEDHGKASIQLGLGFDTTLSIGPVITKQRDQHQLQTEKQKNKHTHNNSSDITTEEDHEAIIESFSPSLKANNNTVLELDLLPHTPASFPWHPPLEKAATSSRGFQMDLSRRGSVSGKGHDQRASDEDENNGGSTRKKLRLSKEQSAFLEESFKDHSTLNPKQKIALAKQLHLHPRQVEVWFQNRRARTKLKQTEMDCEYLKRCCDTLKEENRRLQKELQELRALKTSNPFYIQSPATTLTMCPSCERVATNSISNNTGASTTTAKTIDEPPSKAIGFPRFNPFHPTNPQHLELN* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02784 299 Coils Coil 202 232 - -
Rops3g02784 299 MobiDBLite consensus disorder prediction 118 144 - -
Rops3g02784 299 Gene3D - 144 194 - -
Rops3g02784 299 Pfam Homeobox associated leucine zipper 196 230 IPR003106 GO:0006355|GO:0043565
Rops3g02784 299 SUPERFAMILY Homeodomain-like 129 197 IPR009057 -
Rops3g02784 299 FunFam Homeobox-leucine zipper protein 18 124 201 - -
Rops3g02784 299 SMART HOX_1 138 200 IPR001356 GO:0003677
Rops3g02784 299 ProSiteProfiles 'Homeobox' domain profile. 136 196 IPR001356 GO:0003677
Rops3g02784 299 MobiDBLite consensus disorder prediction 259 299 - -
Rops3g02784 299 MobiDBLite consensus disorder prediction 36 60 - -
Rops3g02784 299 CDD homeodomain 140 197 IPR001356 GO:0003677
Rops3g02784 299 MobiDBLite consensus disorder prediction 96 144 - -
Rops3g02784 299 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 45 271 - -
Rops3g02784 299 Pfam Homeodomain 140 194 IPR001356 GO:0003677
Rops3g02784 299 MobiDBLite consensus disorder prediction 33 60 - -
Rops3g02784 299 SMART halz 196 239 IPR003106 GO:0006355|GO:0043565
Rops3g02784 299 ProSitePatterns 'Homeobox' domain signature. 171 194 IPR017970 GO:0000981|GO:0006355
Rops3g02784 299 MobiDBLite consensus disorder prediction 259 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02784 Rops-Chr3 59127606 59129562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02784 128 293 Homeobox Transcription Factor Family AT4G37790 62.573 1.78e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops3g02784 Homeodomain 5.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02784 K09338 - gmx:100805312 315.849