Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02746 ATGGACAAGGGACCACCTCCTAGCCTCTTTGTTAATGATGGTTCATTCATGGAGAGGTTCAAGCAGCTTCAACAAGAGAAGGAGAAGGGGAAGAATGCAAAATTAGAGGAGTCTAAACCAATTAAAGTTGTCTCAGGGCCGCTGACTCCTAATCCCTCCATTAGTAAGGCTAATGATGCACGGAAAACTCCCCAGGGTGGTTCCAGTGGCAAACTTGCTTTCAGTTTAAAACAAAAGTCAAAGCTAGTGCCACCCCCTGTTAAGTTGGCTGATGATGATGAAGAAGAAACAGATGCCGGGGATGTTTCAAATGATGTAATGCCAAAACGGCAAAAATTGGGTCAGGATGATGGCTCTGAGCGATCATCAAGACAACTTGATGTTGCACCTCCCTCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGACAAACTAGCAAGTTTTGTGGCTAAAAATGGAAGGCAATTTGAGGATGTTACACGCCAAAAAAATCCTGGGGATACACCTTTCAAGTTTTTATTTGATGAGAGATGTGCTGACTACAAATATTATGAACATCGGCTTGCTGAAGAGGAAAAGGCCCTTTCATGGTCCAAGGAGGAACCACAGGCAAATCGTAATGGGGGTACAAGCATTTCATCTTCCAGACCAACAAATGGTCCTCAACGATCATCTCTGCAGCATTCGACTTACCAAATCCCTGCTTCTGCTTTATATGAAAGTGCTGAAGCGCCAGGGGCTTCTGGATCTTCAGTTCAAGCATTATCAGTTGGAAGCACTGATGAGCCCAGTGGATCATCGAATGCTGATTCTTTAGCACTAATGGAGTTCTACATGAAGAAAGCTGCACAGGAAGAAAGGTTGAGACAACCTAAGCAGTCTAAAGATGAGATGCCCCCTCCTGCTTCTCTTCAAGCTTTAGGGAAAAAAGGCCATCACATGGGTGATTATATTCCCCCGGAAGAACTTGAAAAGTTCTTGGCTAACTGTAACGATGCAGCAGCAATGAAAGCTGCAAAGGAGGCTGCAGAGAAGGCCAAGATCCAGGCTGATAATGTGGGCCACAAGCTTTTATCAAAAATGGGTTGGAGAGAAGGTGAGGGTCTAGGCAGCTCCAGGAAGGGTATTTCAGATCCTATCATGGCAGGCAATGTTAAGAAAGATAACTTGGGGGTTGGTGCTGTCCAACCTGGGGAGGTTACTCCTGAAGATGACATATATGAGCAATACAAAAAGAGGATGATGCTTGGCTACCGTCACAGACCAAATCCTCTGAACAATCCTCGTAAGGCTTATTACTGA 1302 0.4493 MDKGPPPSLFVNDGSFMERFKQLQQEKEKGKNAKLEESKPIKVVSGPLTPNPSISKANDARKTPQGGSSGKLAFSLKQKSKLVPPPVKLADDDEEETDAGDVSNDVMPKRQKLGQDDGSERSSRQLDVAPPSPSDPTVKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDERCADYKYYEHRLAEEEKALSWSKEEPQANRNGGTSISSSRPTNGPQRSSLQHSTYQIPASALYESAEAPGASGSSVQALSVGSTDEPSGSSNADSLALMEFYMKKAAQEERLRQPKQSKDEMPPPASLQALGKKGHHMGDYIPPEELEKFLANCNDAAAMKAAKEAAEKAKIQADNVGHKLLSKMGWREGEGLGSSRKGISDPIMAGNVKKDNLGVGAVQPGEVTPEDDIYEQYKKRMMLGYRHRPNPLNNPRKAYY* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02746 433 ProSiteProfiles G-patch domain profile. 350 397 IPR000467 GO:0003676
Rops3g02746 433 Gene3D Surp module 113 196 IPR035967 GO:0003723|GO:0006396
Rops3g02746 433 SMART G-patch_5 348 395 IPR000467 GO:0003676
Rops3g02746 433 MobiDBLite consensus disorder prediction 102 123 - -
Rops3g02746 433 SUPERFAMILY Surp module (SWAP domain) 124 196 IPR035967 GO:0003723|GO:0006396
Rops3g02746 433 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 308 433 IPR040169 -
Rops3g02746 433 Pfam G-patch domain 351 394 IPR000467 GO:0003676
Rops3g02746 433 MobiDBLite consensus disorder prediction 200 236 - -
Rops3g02746 433 MobiDBLite consensus disorder prediction 193 269 - -
Rops3g02746 433 MobiDBLite consensus disorder prediction 48 75 - -
Rops3g02746 433 SMART surpneu2 139 193 IPR000061 GO:0003723|GO:0006396
Rops3g02746 433 Pfam Surp module 140 190 IPR000061 GO:0003723|GO:0006396
Rops3g02746 433 MobiDBLite consensus disorder prediction 246 269 - -
Rops3g02746 433 MobiDBLite consensus disorder prediction 24 139 - -
Rops3g02746 433 MobiDBLite consensus disorder prediction 24 38 - -
Rops3g02746 433 ProSiteProfiles SURP motif repeat profile. 141 184 IPR000061 GO:0003723|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02746 Rops-Chr3 58574886 58580625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02746 336 433 C2H2 Transcription Factor Family AT5G26610 30.973 5.15e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02746 K13096 - gmx:100786213 678.707