Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02742 ATGGCTCATAAGATTAAAAAAGAAGAAACTGAATTTAAGGTTGTACCTGAAACCATAACACCTTGTAGCAACTCCACCACCGCAACCACCGCTATACCAGAACCTTCTAGATTTTTCGATGAGAACACAACCACCGCTAGATCTGACACGTCAGCACGTTATCCGAAGAGATCTCTCCCCCTCGACGATGAAAACCAAGGGATCGCGCAAACGACGTCGTCTGAGGCGAAACGCGCGGTGAATCGCTGCTCCGGTTGTCGTCGGAGGGTTGGACTCACCGGATTCCGGTGCCGATGCGGCGAACTCTTCTGCGCCGAGCATCGTTACTCCGATCGCCATGATTGCAGCTACGATTACAAAGCCGCCGGGAGAATAGCCATCGCGAGGGAAAATCCGGTGGTGAAAGCCGCGAAGATCATCAAACTCTGA 429 0.5198 MAHKIKKEETEFKVVPETITPCSNSTTATTAIPEPSRFFDENTTTARSDTSARYPKRSLPLDDENQGIAQTTSSEAKRAVNRCSGCRRRVGLTGFRCRCGELFCAEHRYSDRHDCSYDYKAAGRIAIARENPVVKAAKIIKL* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02742 142 FunFam Zinc finger AN1-type containing 6 60 138 - -
Rops3g02742 142 Pfam AN1-like Zinc finger 83 120 IPR000058 GO:0008270
Rops3g02742 142 SUPERFAMILY AN1-like Zinc finger 70 136 IPR035896 -
Rops3g02742 142 Gene3D - 60 138 IPR035896 -
Rops3g02742 142 PANTHER AN1-TYPE ZINC FINGER PROTEIN 34 141 - -
Rops3g02742 142 MobiDBLite consensus disorder prediction 22 75 - -
Rops3g02742 142 ProSiteProfiles Zinc finger AN1-type profile. 77 123 IPR000058 GO:0008270
Rops3g02742 142 MobiDBLite consensus disorder prediction 22 52 - -
Rops3g02742 142 SMART AN1_Zf_4 83 120 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02742 Rops-Chr3 58518992 58519420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02742 58 142 C2H2 Transcription Factor Family AT3G52800 52.941 4.16e-27 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02742 - - lja:Lj3g3v0478150.1 215.312