Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02721 ATGTGTTCATCTTACCCTTTTGCTTACTCAAACAGCAGGTTTGGAATTCAATCTGAAGCCTCATCTTCATCTGCACCTCCTCCTTCTCCTCCTCTCAGAGAGGCACTTCCTCTCATTAACAAGTTAAGCCTCAAAAATCAGAAGGAAAATGATTCCTCAAACAGTAATAGTGCATTAGAAGAGGAAGATGACAAGAAAATGGAAAAGCATGATAGTGTTTTGACTGGTGCTGAAGATGATGAAGAATCTGTGACTGTTGCTCTACACATAGGGCTTCCTAGAATGGTTACTTCTTCTGAAATGGGGTCAAGGAGGGTCTCAACTTCTATAGAAATGGCTGAAAAAGAGGAAGTGAATATGATTTCTGAACAGCCTTTGAATAGTTTGAACAAGGGTCAGTATTGGATTCCTACCCCTTCTCAGATTCTCATTGGTCCTACACAGTTCTCATGTCCTGTGTGCTCTAAAACTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAAGGGCCTGACTCTCTAAAAGGAACACAACCAACAGCTATGTTAAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTCAAGGATTTCAGAACTCTTCAAACACATTATAAGAGAAAGCATGGCATAAAACCCTATATGTGTAGAAAATGTGGTAAAGCATTTGCAGTGAAAGGTGATTGGAGAACACATGAGAAGAATTGTGGCAAAATATGGTATTGTTTATGTGGGTCAGATTTCAAACACAAAAGGTCTCTAAAAGATCACATCAAAGCCTTTGGTTATGGCCATGGAGCTTTTGGCATTGATTGTTTGCAAGAAGAAGATGAAGCAGCCTCAGAAATTGAGCATGATGGGGATAGCTGTTTGTGA 933 0.4051 MCSSYPFAYSNSRFGIQSEASSSSAPPPSPPLREALPLINKLSLKNQKENDSSNSNSALEEEDDKKMEKHDSVLTGAEDDEESVTVALHIGLPRMVTSSEMGSRRVSTSIEMAEKEEVNMISEQPLNSLNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCGKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGAFGIDCLQEEDEAASEIEHDGDSCL* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02721 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 149 176 IPR013087 -
Rops3g02721 310 MobiDBLite consensus disorder prediction 58 80 - -
Rops3g02721 310 FunFam zinc finger protein WIP2-like 148 171 - -
Rops3g02721 310 ProSitePatterns Zinc finger C2H2 type domain signature. 151 171 IPR013087 -
Rops3g02721 310 MobiDBLite consensus disorder prediction 17 80 - -
Rops3g02721 310 Gene3D Classic Zinc Finger 148 171 - -
Rops3g02721 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 233 253 IPR013087 -
Rops3g02721 310 SMART c2h2final6 233 253 IPR013087 -
Rops3g02721 310 SMART c2h2final6 149 171 IPR013087 -
Rops3g02721 310 Pfam Zinc finger, C2H2 type 149 168 IPR013087 -
Rops3g02721 310 PANTHER ZINC FINGER PROTEIN WIP2 8 303 IPR043584 GO:0003700|GO:0010468
Rops3g02721 310 FunFam Zinc finger protein WIP2 202 284 - -
Rops3g02721 310 Gene3D Classic Zinc Finger 211 283 - -
Rops3g02721 310 SUPERFAMILY beta-beta-alpha zinc fingers 217 253 IPR036236 -
Rops3g02721 310 SUPERFAMILY beta-beta-alpha zinc fingers 143 171 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02721 Rops-Chr3 57674544 57676608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02721 32 303 C2H2 Transcription Factor Family AT3G57670 59.740 1.60e-124 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops3g02721 zf-C2H2_6 8.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02721 - - gmx:100794446 498.049