Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02718 ATGCTGCTCTTGATGAATGCGGTTCTTGGAAGAATTGCTTCAACATCACAAGAGTTGGCTCATTACCACTCTGGAGATGATTTAGAAAAATCACATCATCAGCGTGTATCTGAGTTGCAACGACTTCGCTCAATGTATGTGCTTCTTTCCTATAACATTGCATTACCTGCTTTGACTATTCCAGATTTGTGTTGGGAACTTGCTCAACTCCAAGACACGTACATCTTACAAGGTGATTATGATTTGAAGGTCATGCGCCAAGAGTGCTACATTAACCGGCAGAAAGCACCTGAAAATCTTTTACTTGATTCACTAGGAAATATAAAGATTTCATATTTTGGTCTGAGCGCATTGCCTGAGCAGGGAGTGAGTATCCTTCGGACAACTTGTGGGACTCCAAACTATGTAGCTCATGAGGTACTCAGTCACAAGGGTTACAATGGTGCTGTTGCAGATGTTTGGTCCTGTGGGGTTATCCTCTATGTCCTAATGGCTGGATATCTCCCCTTTCATGTGCTTAGGCATAGACCTTCAAATGCATCAATTAGTTTTGAACTCACTTTCATTGCCAATCAGTACCAGTTTAAGTTTGAATTCAAAGCGATTGAAATGGATGGTATTACTGAAACTGATTATACTAGGGATGAGGTAAAACATTGTAGGCCTATTACATGTACTCTTTCTCTGAAAGTCACTGTAAATGTGCATGACATGTCTCAATCAACCCCAACTTTGGAATTGATTATCAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCATGTAGACAATTGCTCACAACTGGATGGAGTTCTTTAATGACTTCAAAGAGATTTGTTGTTGGAGATTTGTTGCTCACATTGTAA 885 0.3989 MLLLMNAVLGRIASTSQELAHYHSGDDLEKSHHQRVSELQRLRSMYVLLSYNIALPALTIPDLCWELAQLQDTYILQGDYDLKVMRQECYINRQKAPENLLLDSLGNIKISYFGLSALPEQGVSILRTTCGTPNYVAHEVLSHKGYNGAVADVWSCGVILYVLMAGYLPFHVLRHRPSNASISFELTFIANQYQFKFEFKAIEMDGITETDYTRDEVKHCRPITCTLSLKVTVNVHDMSQSTPTLELIIKDLHGYEWRFKHIFRGQPCRQLLTTGWSSLMTSKRFVVGDLLLTL* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02718 294 SMART serkin_6 3 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g02718 294 SUPERFAMILY Protein kinase-like (PK-like) 90 172 IPR011009 -
Rops3g02718 294 Gene3D - 216 294 IPR015300 -
Rops3g02718 294 ProSiteProfiles Protein kinase domain profile. 1 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g02718 294 ProSiteProfiles B3 DNA-binding domain profile. 246 294 IPR003340 GO:0003677
Rops3g02718 294 Gene3D Transferase(Phosphotransferase) domain 1 74 215 - -
Rops3g02718 294 Pfam B3 DNA binding domain 239 291 IPR003340 GO:0003677
Rops3g02718 294 Pfam Protein kinase domain 97 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g02718 294 SUPERFAMILY DNA-binding pseudobarrel domain 235 292 IPR015300 -
Rops3g02718 294 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 92 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02718 Rops-Chr3 57606222 57612295 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02718 92 170 CBL-interacting serine-threonine protein kinases AT4G24400 86.076 2.77e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Rops3g02718 Pkinase 3.3e-19 CL0016
TF B3 Rops3g02718 Pkinase 3.3e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02718 - - gmx:100785444 146.362