Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02711 ATGCCAGGGAAACCTGAAATTGATGATTGGCGAGTAAAGCGTAGTGAGCAGATTCAGTTTCAATCTTCCATTTACTCTCATCAGCCTTGGTGGCGTGGAGTTAGTGAAATTGAAAATGCCTCCAAATCTTCATCTGATCAGCTAAATGGTTCAATCATGAATGGTGTCACTCATTCAGAGGCCAATGAAGGGCTAGCTAATGGAGTTGATTTCAATAAACAAAGGCAACCTATGGTTTCTCCCTCACTGTCTGGAACTGATAAGTCAGGTGGTGGTGTTGTCAAAGAGCACCAAAACATCAAGCATGCCCTGTCTTCAACCCCATTTACCATAGGCAAACACCTTGGTCCAAATTCCCAGGTGGAATTTGTTGGTCATTCAATTGTTTTAACATCTCCTTGTTCAGATGCACAGTATGGTCGAATCTTGACTACTTATGGACAACAAGCTATGATAAACCCTCAGTTGCATGGAATGCATCATGCTAGAATGCTTTTGCCACTTGAAATGGAAGAGGAACCTGTTTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGGCGAAGACAGTCACGTGCTAAGGCTGAGCTTGAAAAGAAAGTAATTAAAGCTAGAAAGCCATATCTTCATGAATCCCGTCACCTACATGCTATGAGAAGGGCAAGGGGCAATGGGGGTCGCTTTCTCAATACAAAGAAGCTTGAACATGACAACTCTAATGCCACTCTAGAAAAAGGCAACAATATTGGTGCAAACTCCTCAACAAGCTCACATGCCACTCAACATTTGCTTACCAACAATGAGAATCTAGGCTCATCAAATGCATCACAGTCCATGATGGTTCAGGACATGCACAAAGTAAAGAGTTTCAACATTGGTTACCATGATGGCAATTTGAAGGCAATTCATTCTTGGCTAAGTTAG 924 0.4188 MPGKPEIDDWRVKRSEQIQFQSSIYSHQPWWRGVSEIENASKSSSDQLNGSIMNGVTHSEANEGLANGVDFNKQRQPMVSPSLSGTDKSGGGVVKEHQNIKHALSSTPFTIGKHLGPNSQVEFVGHSIVLTSPCSDAQYGRILTTYGQQAMINPQLHGMHHARMLLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKARKPYLHESRHLHAMRRARGNGGRFLNTKKLEHDNSNATLEKGNNIGANSSTSSHATQHLLTNNENLGSSNASQSMMVQDMHKVKSFNIGYHDGNLKAIHSWLS* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02711 307 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 43 285 IPR001289 GO:0003700|GO:0006355
Rops3g02711 307 Gene3D - 171 232 - -
Rops3g02711 307 SMART cbf3 170 231 IPR001289 GO:0003700|GO:0006355
Rops3g02711 307 PRINTS CCAAT-binding transcription factor subunit B signature 174 196 IPR001289 GO:0003700|GO:0006355
Rops3g02711 307 PRINTS CCAAT-binding transcription factor subunit B signature 205 228 IPR001289 GO:0003700|GO:0006355
Rops3g02711 307 ProSiteProfiles NF-YA/HAP2 family profile. 171 231 IPR001289 GO:0003700|GO:0006355
Rops3g02711 307 ProSitePatterns NF-YA/HAP2 subunit signature. 176 196 IPR018362 GO:0003677|GO:0016602
Rops3g02711 307 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 173 228 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02711 Rops-Chr3 57443768 57454939 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02711 20 275 CCAAT-HAP2 Transcription Factor Family AT5G12840 40.000 4.35e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Rops3g02711 CBFB_NFYA 1.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02711 K08064 - gmx:100782085 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g02711 3 57443768 57454939 Rops3g02711 3 57443768 57454939 ECH