Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02706 ATGAAGGAAAATGGTGGCAAAGAACACTGTCCCTCAACTCTTTTTGTTTCCAACTTGCCCTATTCCTTTTCCAACTCTCAGCTGGAGGAGACGTTTAGTGAGGTTGGACCTGTCCGGCGTTGCTTCATGGTCACACAGAAGGGGTCTTCCCAGCATCGTGGTTTTGGTTATGTCCAATTTGCTGTCGAGGAAGATGCTAATCGTGCTATTGAGCTAAAGAATGGTTCATCTGTTGAAGGCCGGAAAATTGTGGTGAAGCATGCAATGCCGCGTCCTCCCCGTGAAAAACGACAATCAAAACCAAATCAAGTGGGCAAGACAGATGATCTTACCAAGTCAAAAATTGATGATGAAGACGACATATTATCTGGAGCAGAGAAGCCTGTTTCAGTTTTGAAGGAAGAAGAAGTACAAGTTTCAAATAAACAACAAAACTCAAGAAAGCCCATGGAAATGAAAAAAGCAACTCTTTGTAACGATGTAGCAGATGAGGGGGGTTGCTCAGAAAAGCAGAGGGTTGCTAGAACTGTTATATTTGGTGGTCTATTGAATTCTGATATGGCTGAAGAGGTTCACCGCCAAGCCAGAGAGATTGGCACTGTGTGTTCTATTAAGTACCCCCTTTCAAGGAAAGATCTTGAGCAACATGGTCTCCTGCAAGATGGCTGTACTTTGGATGCTTCAGCTGTACTTTATACAAGTGTAAAATCAGCTCGAGCTTCTGTTGCAACGTTACATAAAAAAGAGATAGGAGGGGGAACTGTTTGGGCCCGCCAACTGGGTGGAGAGGGCTCCAAGACTCAGAAATGGAAGCTTATTGTCAGAAACCTTCCCTTCAAGGGCAAAGAAAATGAAATAAGAGATATGTTTTCATCTGCAGGGTATGTGTGGGATGTATTTATTCCACACAAGTCAGACATGGGTTTGTCTAAGGGTTTTGCATTTGTTAAATTCACCTGCAAGCAAGATGCGGAAAATGCCATTCAAAGGCTCAATGGATCAAAGTTTGCAAAACGACTCATAGCTGTTGACTGGGCTGTTCCAAAAAAGATATTTAATAGTGATAAAAATGATGCTCTTGCTTCAGAGAAAGGACAACAAAAGGTGAGTGATGAAGATAGCAGCACTACTGAGGATGATGTCGAGCATATTGACAAACAATCTTGTCATGGAGATGATAGTGATGTAGATTCCTCTGGTGCCACAAAGGAAGAAGGGTTTCCTTCTGAAGATAATTTTGATAAGGAAGCAGACATTGCAAGAAAAGTCCTTAACAACTTGATTACATCTTCCACCAAAGGAACATCTGTAAATAATGATTCTATGCCTTCCAAAGAAAATAAGAAGCCAAAATCCAATGAAATTGTTAATGATGCAGATAGTAAAGCATCTAATGAGTCTGAAAAGGTTTCGGGTGTTTCTAAGCCTGAAATTTCCGATGGAAGCAAGTTATCAAATCCTAAGCAAACAGAAGAAGATGATTTGCAGAGAACGGTTTTTATAAGTAATCTTCCCTTTGAATGTGATAATGAAGAAGTGAAGCAACGATTTTCTGCATTTGGGGAAATAGAATACTTTGTTCCTGTTCTCCACCAAGTGACCAAGCGACCAAGAGGGACTGGTTTTCTTAAGTTTAAAACCATAGAAGCAGCTAATACTGCAATTTCAACTGCCAGTGCTGCTTCTGGGCTGGGTGTTTTACTGAAAGGTAGACCATTGAAAGTTTTGAAGGCTTTGGACAAGAAATCAGCTCATGACAAGGAACTGGAGAAAGCAAAAAGTGAGGTTCATGACCACCGCAATCTTTATTTGGCAAAGGAGGGACTTATTCTTGAGGGAACTCCAGCTGCTGAAGGGGTGTCATCCAGCGATATGTTAAAACGCCAAGAGTTGGAAAGGAAAAAGAAGACAAAGCTTCAATCTCCGAATTTTCATGTTTCAAGAACTAGACTTATTATCTACAACTTACCGAAGTCAATGACTGAAAAAGAACTAAAGAAGCTTTGCATTGATGCAGTGATCTCTAGAGCTACCAAGCAAAAACCTGTAATTCGGCAGATAAAATTTTTGAAAAACGAAAAGAAAGGAAAGGTTTCTCAAGAATGCTATTCACGTGGAGTTGCGTTTGTTGAATTTTCAGAGCATCAGCATGCCCTTGTGGCTCTGAGAGTTCTTAACAACAATCCTGAAACTTTTGGTCCTGAACATAGGCCAATAGCGGAGTTTGCTCTTGATAATGTTCAAACACTGAAACTTAGGAAGGCAAAGCTACAATCTCAGCAGCAGGCTCCTCATGATGAGAATGATGCCAACAAAAATGACAAACCCAGCATAGTGGAAAAAGATCAAACACATGTAAGGGACAGAAAACGAAAATCTCAAGAGCATGAAAAACCAGCAAAGGACTCAGTGCTGAATACTAATGGTGAATTAGGTGGTAAAGTAGCAAATGAAAAATCCCCTCAAGGACTCAAATCCAAAAGACAGAAAGGCAACCATAAGAATACAAGGGCTGAAGTGTCATCACTGAAAGGAAATCCAGAAGCCTTGTCCATGAAGCCAAAGAATAACCAACATGGCAAGAATCATGGTGAAAGTCAAAACCCTGCCATTGACACTAACAGAACAAAATCAGGAAACAAAGATGATGTTGGATATAGAAAAAGGAAGATGCAAAACCAAGAAGAACAAGCTGGGCAAAAGTTTTCTAAGAAAAGGCAAAAGAAGAATAAAGATTCAGTAGGGAAGGATGTAGTAGATAAGCTTGACATGCTTATAGAACAATATAGATCCAAGTTCTCACACAAGGGTTCCCAAGGGAATGATGGTGAGAAAAAACCTTCAAAACAGCTTAGAAAATGGTTCCAATCATAG 2874 0.4036 MKENGGKEHCPSTLFVSNLPYSFSNSQLEETFSEVGPVRRCFMVTQKGSSQHRGFGYVQFAVEEDANRAIELKNGSSVEGRKIVVKHAMPRPPREKRQSKPNQVGKTDDLTKSKIDDEDDILSGAEKPVSVLKEEEVQVSNKQQNSRKPMEMKKATLCNDVADEGGCSEKQRVARTVIFGGLLNSDMAEEVHRQAREIGTVCSIKYPLSRKDLEQHGLLQDGCTLDASAVLYTSVKSARASVATLHKKEIGGGTVWARQLGGEGSKTQKWKLIVRNLPFKGKENEIRDMFSSAGYVWDVFIPHKSDMGLSKGFAFVKFTCKQDAENAIQRLNGSKFAKRLIAVDWAVPKKIFNSDKNDALASEKGQQKVSDEDSSTTEDDVEHIDKQSCHGDDSDVDSSGATKEEGFPSEDNFDKEADIARKVLNNLITSSTKGTSVNNDSMPSKENKKPKSNEIVNDADSKASNESEKVSGVSKPEISDGSKLSNPKQTEEDDLQRTVFISNLPFECDNEEVKQRFSAFGEIEYFVPVLHQVTKRPRGTGFLKFKTIEAANTAISTASAASGLGVLLKGRPLKVLKALDKKSAHDKELEKAKSEVHDHRNLYLAKEGLILEGTPAAEGVSSSDMLKRQELERKKKTKLQSPNFHVSRTRLIIYNLPKSMTEKELKKLCIDAVISRATKQKPVIRQIKFLKNEKKGKVSQECYSRGVAFVEFSEHQHALVALRVLNNNPETFGPEHRPIAEFALDNVQTLKLRKAKLQSQQQAPHDENDANKNDKPSIVEKDQTHVRDRKRKSQEHEKPAKDSVLNTNGELGGKVANEKSPQGLKSKRQKGNHKNTRAEVSSLKGNPEALSMKPKNNQHGKNHGESQNPAIDTNRTKSGNKDDVGYRKRKMQNQEEQAGQKFSKKRQKKNKDSVGKDVVDKLDMLIEQYRSKFSHKGSQGNDGEKKPSKQLRKWFQS* 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02706 957 CDD RRM1_RBM28_like 13 91 - -
Rops3g02706 957 Gene3D - 635 738 IPR012677 -
Rops3g02706 957 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 649 757 IPR000504 GO:0003723
Rops3g02706 957 CDD RRM2_RBM28_like 271 347 - -
Rops3g02706 957 MobiDBLite consensus disorder prediction 84 127 - -
Rops3g02706 957 FunFam RNA-binding motif protein 28 648 743 - -
Rops3g02706 957 MobiDBLite consensus disorder prediction 444 465 - -
Rops3g02706 957 MobiDBLite consensus disorder prediction 358 415 - -
Rops3g02706 957 SMART rrm1_1 498 576 IPR000504 GO:0003723
Rops3g02706 957 SMART rrm1_1 271 344 IPR000504 GO:0003723
Rops3g02706 957 SMART rrm1_1 650 741 IPR000504 GO:0003723
Rops3g02706 957 SMART rrm1_1 13 86 IPR000504 GO:0003723
Rops3g02706 957 Coils Coil 740 760 - -
Rops3g02706 957 SUPERFAMILY RNA-binding domain, RBD 266 350 IPR035979 GO:0003676
Rops3g02706 957 MobiDBLite consensus disorder prediction 910 930 - -
Rops3g02706 957 CDD RRM4_RBM28_like 649 746 - -
Rops3g02706 957 Coils Coil 582 602 - -
Rops3g02706 957 SUPERFAMILY RNA-binding domain, RBD 12 256 IPR035979 GO:0003676
Rops3g02706 957 FunFam Putative RNA binding ribonucleoprotein 425 594 - -
Rops3g02706 957 Gene3D - 429 594 IPR012677 -
Rops3g02706 957 Gene3D - 1 104 IPR012677 -
Rops3g02706 957 MobiDBLite consensus disorder prediction 431 494 - -
Rops3g02706 957 MobiDBLite consensus disorder prediction 755 957 - -
Rops3g02706 957 PANTHER RNA-BINDING MOTIF PROTEIN 14B 9 957 - -
Rops3g02706 957 MobiDBLite consensus disorder prediction 81 127 - -
Rops3g02706 957 MobiDBLite consensus disorder prediction 851 875 - -
Rops3g02706 957 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 497 580 IPR000504 GO:0003723
Rops3g02706 957 MobiDBLite consensus disorder prediction 937 951 - -
Rops3g02706 957 MobiDBLite consensus disorder prediction 361 400 - -
Rops3g02706 957 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 83 IPR000504 GO:0003723
Rops3g02706 957 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 341 IPR000504 GO:0003723
Rops3g02706 957 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 499 557 IPR000504 GO:0003723
Rops3g02706 957 MobiDBLite consensus disorder prediction 132 151 - -
Rops3g02706 957 FunFam - 1 122 - -
Rops3g02706 957 CDD RRM3_RBM28_like 497 578 - -
Rops3g02706 957 MobiDBLite consensus disorder prediction 767 803 - -
Rops3g02706 957 SUPERFAMILY RNA-binding domain, RBD 497 727 IPR035979 GO:0003676
Rops3g02706 957 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Rops3g02706 957 MobiDBLite consensus disorder prediction 876 903 - -
Rops3g02706 957 Gene3D - 257 381 IPR012677 -
Rops3g02706 957 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 348 IPR000504 GO:0003723
Rops3g02706 957 MobiDBLite consensus disorder prediction 466 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02706 Rops-Chr3 57389862 57398842 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02706 16 92 Eukaryotic Initiation Factors Gene Family AT3G11400 36.364 9.72e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02706 K14573 - gmx:100794821 1536.55