Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02668 ATGCAGATTGGACCCCTCCACCTGACACAAGGATGGGCCCGAGAGGAAAAAGGTTGCCTCTTGCAAAAAGAAACCGGCTACCCTGCTGAATTGTACAATGGGTTCCATGGTTCTGGAACGAAAGCTTTGAATTCTGTGGAACTCATCCATCGTGACTCTCCAAGATCACCATTCTTTAATCCCACAGAAACTCAATTCCAAAGAGTTTCCAATGCTGTGCGTCGTTCCATCAATCGTGCCAATCATTTCAACAAAGATTATGTCCCTACAAACACACCTCAAACAACTATAATCCCAGATAGAGGTGAATACCTCATGAGTTATTCAATTGGCACCCCACCATTTCAGCTCTATAGTATTGTTGATACAGGTAGTGGCATTGTTTGGTCACAATGCAAGCCTTGTGAAACCTGTTACAACCAAACCTCTCCAATGTTTGAACCTTCAAAATCCACCTCATACAGAACCATTCCTTGCTCTTCCACGACATGTCAATCTTTGCATGGTACTTGCTCTTCTGGTAATTGTCAATATGGTATAAAATATGGAGATGGATCACACTCACAAGGAGATCTTAGTTTGGATACTCTCACTTTGGGTTCCACTGATGGCTCTCTTATCTCAATTATTAACATTATGATAGGATGTGGACACAACAATTATGAGTTGTTTCAAGGGCAAAACTCTGGGGTAGTTGGCCTTGGATGTGGACCTTTGTCCCTTATAACTCAATTGCGTTCTTCAATTGATGGAAGATTCTCATATTGTTTGGTGCCAATGTTTTCAAAGCCTAACTCCTCAAGCAAACTCAGTTTTGGACATGATGCTGTGGCTTATGTACAAGGGACTGTTTCAACTCCCTTATACCCTGATAGAGATGGAAATACCTTTTACTATCTAAGATTGGATGCATTTAGTGTGGGAGATAATAGAATAGAGTTTCCAAGCCCCCCTGGACCTCTTGATAGTGGAAACATCATAATTGATTCAGGCACAACACTAACTCTTTTGCCACATGATGTTTACTCAAAGTTGGAATCAGCAGTGGCAAATGTGGTTAAATTAGAGCGTGTTTATAATGCTATTAAAGAATTGTCCCTATGCTACAAAATTCCAGCACCACAATTTGAGGTTCCAATAATCACTGCTCATTTTAATGCTGCAGATGTCCAATTGATGGCTATGAACACCTTTATTCAAATTTCTGACCAAGTTGTGTGCTTGGCTTTCACCACTTCTCAAGATGTTCCCATCTTTGGAAATTTGGCTCAACAGAACTTCTTGATTGGTTATGATGTCCTAGAGAAAGTCGTCTCCTTTAGGCCCATGGATTGTGCTTGA 1341 0.4087 MQIGPLHLTQGWAREEKGCLLQKETGYPAELYNGFHGSGTKALNSVELIHRDSPRSPFFNPTETQFQRVSNAVRRSINRANHFNKDYVPTNTPQTTIIPDRGEYLMSYSIGTPPFQLYSIVDTGSGIVWSQCKPCETCYNQTSPMFEPSKSTSYRTIPCSSTTCQSLHGTCSSGNCQYGIKYGDGSHSQGDLSLDTLTLGSTDGSLISIINIMIGCGHNNYELFQGQNSGVVGLGCGPLSLITQLRSSIDGRFSYCLVPMFSKPNSSSKLSFGHDAVAYVQGTVSTPLYPDRDGNTFYYLRLDAFSVGDNRIEFPSPPGPLDSGNIIIDSGTTLTLLPHDVYSKLESAVANVVKLERVYNAIKELSLCYKIPAPQFEVPIITAHFNAADVQLMAMNTFIQISDQVVCLAFTTSQDVPIFGNLAQQNFLIGYDVLEKVVSFRPMDCA* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02668 446 CDD pepsin_A_like_plant 103 445 IPR034161 -
Rops3g02668 446 ProSiteProfiles Peptidase family A1 domain profile. 104 441 IPR033121 -
Rops3g02668 446 FunFam Probable aspartic protease At2g35615 84 273 - -
Rops3g02668 446 PANTHER OS07G0603500 PROTEIN-RELATED 46 445 - -
Rops3g02668 446 Pfam Xylanase inhibitor N-terminal 104 274 IPR032861 -
Rops3g02668 446 Gene3D Acid Proteases 275 446 IPR021109 -
Rops3g02668 446 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 326 337 IPR001969 GO:0004190|GO:0006508
Rops3g02668 446 Gene3D Acid Proteases 84 274 IPR021109 -
Rops3g02668 446 Pfam Xylanase inhibitor C-terminal 298 441 IPR032799 -
Rops3g02668 446 FunFam Aspartic proteinase CDR1 275 446 - -
Rops3g02668 446 SUPERFAMILY Acid proteases 98 445 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02668 Rops-Chr3 56748488 56749777 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02668 102 445 Miscellaneous Gene Families AT1G44130 25.134 1.51e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02668 - - gmx:100789696 492.656