Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02666 ATGTTAGTTATTGGTTTCGTAGAAGAAACAAACTGGAGATGTGCATGGAGGCTGGTGATTGCTTTTATTAGCATGGCATCAAATAATCCATTCTTTGATGATATACGGAGCAAAGCTGATGTTGATCCTCCACAAAATGAAGAATCGACAGATGTCAATGAATTAGTGAATGATCCTGCACAAACTCCTCTGAAACCTAATGGGACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTATGCCTGAATGCAATGTACCCTCCAATCCATCAGTGTTCAAATGGTCACACTATATGCTCAGGTTGCAAACCCAGGGTCCATAATCGGTGCCCTACTTGTAGACATGAGCTTGGCAATATCAGATGTCTGGCACTGGAGAAGGTGGCTGCATCTTTGGAGCTTCCCTGTAAATATCAAGCTTTTGGGTGCATTGGTATATATCCATATTACAGCAAGCTAAAGCATGAATCTCAATGTGCTTATAGACCTTATAACTGTCCATATGCTGGTTCAGAATGCTCCGTTATGGGTGATATACCCAACCTTGTGGCCCATCTAAAAGATGATCACAAGGTGGACATGCACAATGGTAGCACGTTTAATCATCGTTATGTCAAATCAAATCCACAAGAAGTTGAAAATGCCACATGGATGTTAACGGTTTTCAGCTGCTTTGGTCAGTATTTTTGTCTACATTTTGAAGCCTTTCAGCTAGGAATGGCTCCTGTCTACATAGCCTTTTTGCGGTTTATGGGTGATGATAACGAGGCAAAGAATTATAGCTACAGTCTAGAGGTAGGTGGAAATGGGAGGAAGATGATTTGGCAGGGGGTGCCAAGGAGCATCAGGGACAGCCACCGTAAGGTTCGTGACAGTTTTGATGGTCTCATCATTCAGAGGAATATGGCACTCTTCTTTTCCGGTGGTGACCGGAAGGAATTAAAGCTGAGAGTTACTGGTAGGATTTGGAAAGAACAGTGA 987 0.4286 MLVIGFVEETNWRCAWRLVIAFISMASNNPFFDDIRSKADVDPPQNEESTDVNELVNDPAQTPLKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQAFGCIGIYPYYSKLKHESQCAYRPYNCPYAGSECSVMGDIPNLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02666 328 ProSiteProfiles Zinc finger SIAH-type profile. 133 193 IPR013010 GO:0008270
Rops3g02666 328 FunFam E3 ubiquitin-protein ligase SINAT3 132 188 - -
Rops3g02666 328 FunFam E3 ubiquitin-protein ligase SINAT5-like 38 131 - -
Rops3g02666 328 SUPERFAMILY TRAF domain-like 133 325 - -
Rops3g02666 328 ProSiteProfiles Zinc finger RING-type profile. 80 116 IPR001841 -
Rops3g02666 328 SUPERFAMILY RING/U-box 72 120 - -
Rops3g02666 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 188 IPR013083 -
Rops3g02666 328 MobiDBLite consensus disorder prediction 46 69 - -
Rops3g02666 328 MobiDBLite consensus disorder prediction 37 69 - -
Rops3g02666 328 FunFam E3 ubiquitin-protein ligase SINAT5-like 189 321 - -
Rops3g02666 328 CDD RING-HC_SIAHs 78 116 - -
Rops3g02666 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 132 IPR013083 -
Rops3g02666 328 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 189 321 IPR008974 GO:0005515
Rops3g02666 328 Pfam Seven in absentia protein family 122 321 IPR018121 GO:0005737|GO:0006511|GO:0007275
Rops3g02666 328 CDD Sina 194 322 - -
Rops3g02666 328 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 58 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02666 Rops-Chr3 56653872 56656085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02666 71 328 C3H Transcription Factor Family AT2G41980 79.457 2.81e-160 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02666 K04506 - gmx:100793457 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g02666 3 56653872 56656085 Rops3g02666 3 56653872 56656085 ECH