Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02643 ATGCAGATCTTCGTGAAAGCTATGACTGGCAAGACCATCACCCTTGAGGTGGAAAGTTCAGATACCATTGACAATGTTAAAGCCAAGATTCAAGATAAGGAAGGGATCCCACCTGACCAGCAAAGGCTCATATTTGCTAGTAAGCAATTGAAGGATGGTCGCACTCTTGTAGATTACAACATTCAAAAGGAGTTCACCCTTCACCTTGTGCTTCGCTGGTCTTCAGGTGCGAGTGAGGTCGTCAATGGCGGCTCGCCGGTATTCTGGTCGCTATGGCACTTTTCCGACGAGAATGGGTTCTCTCTTCCGACGCCATAA 318 0.478 MQIFVKAMTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFASKQLKDGRTLVDYNIQKEFTLHLVLRWSSGASEVVNGGSPVFWSLWHFSDENGFSLPTP* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02643 105 SMART ubq_7 1 72 IPR000626 GO:0005515
Rops3g02643 105 CDD Ubl_ubiquitin 1 76 - -
Rops3g02643 105 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Rops3g02643 105 PANTHER UBIQUITIN 1 77 - -
Rops3g02643 105 PRINTS Ubiquitin signature 53 74 IPR019956 -
Rops3g02643 105 PRINTS Ubiquitin signature 11 31 IPR019956 -
Rops3g02643 105 PRINTS Ubiquitin signature 32 52 IPR019956 -
Rops3g02643 105 Gene3D - 1 84 - -
Rops3g02643 105 Pfam Ubiquitin family 3 72 IPR000626 GO:0005515
Rops3g02643 105 FunFam Ubiquitin-60S ribosomal protein 1 77 - -
Rops3g02643 105 SUPERFAMILY Ubiquitin-like 1 77 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02643 Rops-Chr3 55970181 55970498 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02643 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 88.312 4.10e-45 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02643 K02977 K08770 mgl:MGL_3529 135.576