Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02635 ATGACAAGACATGTAAAGGAGTTTCATAACAAGATTTCTACCTCTGCTGGTGTTAAAAGTCAGAAGCAGTATGTATGCCCAGAAATTGGTTGTGGGAAGGTTTTCAAATTTGCATCGAAGTTACAGAAGCACAAAGATTCTCATGTTAAGTTGGAGTCAATAGAGGTAGTGTGCTTATATCCTGGGTGTATGAAGCATTTCACTAATTTCCAGTGCCTCAGAGCACACACTAAATCCTGTCATCAATATGTGACCTGTGAGACTTGTGGGAAAAAGCAACTGAAGAAGAACATTAAAAGGCACCTCCAGAAGCATGAAACTGGTAATTCATCACAGGTGTTTCATTGCGAATATAAAGGTTGTAGCTGCACATTTTCAAGTAAATCCAATCTTCGAAAGCATGTCAAGGCTGTGCACTTGCAAGATAAACCTTTTATGTGTGGCTTTCTGGATTGTGGCATGAGATTTGCTTATAAACATGTGAGAGATAACCATGAAAAATCTGGTTCACATGTTTTTACCCTTGGGGATTTTGAAGAAGCTGATGAAGAATTCAGGTCAAGGACAAGGGGAGGAAGGAAGAGAAAGCATCCTACAGTTGAAATGTTAGTTAGGAAGAGAGTTGCTCCACCAAGTCAATTGGAGTTGCTTATGAAGGATATTGACTAG 669 0.3946 MTRHVKEFHNKISTSAGVKSQKQYVCPEIGCGKVFKFASKLQKHKDSHVKLESIEVVCLYPGCMKHFTNFQCLRAHTKSCHQYVTCETCGKKQLKKNIKRHLQKHETGNSSQVFHCEYKGCSCTFSSKSNLRKHVKAVHLQDKPFMCGFLDCGMRFAYKHVRDNHEKSGSHVFTLGDFEEADEEFRSRTRGGRKRKHPTVEMLVRKRVAPPSQLELLMKDID* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02635 222 SMART c2h2final6 56 81 IPR013087 -
Rops3g02635 222 SMART c2h2final6 114 139 IPR013087 -
Rops3g02635 222 SMART c2h2final6 145 171 IPR013087 -
Rops3g02635 222 SMART c2h2final6 84 105 IPR013087 -
Rops3g02635 222 SMART c2h2final6 24 48 IPR013087 -
Rops3g02635 222 SUPERFAMILY beta-beta-alpha zinc fingers 21 50 IPR036236 -
Rops3g02635 222 Gene3D Classic Zinc Finger 109 189 - -
Rops3g02635 222 Pfam Zinc finger, C2H2 type 114 139 IPR013087 -
Rops3g02635 222 Pfam Zinc finger, C2H2 type 24 48 IPR013087 -
Rops3g02635 222 ProSitePatterns Zinc finger C2H2 type domain signature. 116 139 IPR013087 -
Rops3g02635 222 ProSitePatterns Zinc finger C2H2 type domain signature. 58 81 IPR013087 -
Rops3g02635 222 ProSitePatterns Zinc finger C2H2 type domain signature. 26 48 IPR013087 -
Rops3g02635 222 ProSitePatterns Zinc finger C2H2 type domain signature. 147 171 IPR013087 -
Rops3g02635 222 Gene3D Classic Zinc Finger 15 49 - -
Rops3g02635 222 ProSiteProfiles Zinc finger C2H2 type domain profile. 24 53 IPR013087 -
Rops3g02635 222 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 144 IPR013087 -
Rops3g02635 222 SUPERFAMILY beta-beta-alpha zinc fingers 97 152 IPR036236 -
Rops3g02635 222 PANTHER ZINC FINGER PROTEIN 1 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02635 Rops-Chr3 55707491 55708830 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02635 21 174 C2H2 Transcription Factor Family AT1G72050 63.636 3.77e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops3g02635 zf-C2H2 0.011 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02635 K09191 - mtr:11444101 375.17