Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02630 ATGGGTTTGAGAAGCCTGGGGCCATTTGGGTCTTTTATTAAAGAAGGATGGGAAAAAGCATTCGCTGTTGGAAAATTCTTCTGTTTTCTACATGTTACCAACACCTATCTCATTACCCCTGTTCAGACCTTTGGTCCTAGCATGCTTCCTGCAATTGATTTGACATCAACTGTGTTTTTAGCTGAAAGGATCTCTACCCGATTTGGTAAAGTTGCTGATGGAGATATTGTAGTCTTGCGCTCACCTCAAAACCCTAGAAAGTTTATCACCAAACGCTTGGTTGGAATGGAGGGTGACAGTGTTACATACATTAGTCCCGTGAACGGTGATAAGCAGGAGAGTGTTTTGATTCCAAAGGGTCACATTTGGGTGCAGGGAGATAACATGTATAAGACCAATGATTCAAGAAATTTTGGTCCTGTTCCTTATGGCCTTATCGAGAGTAGAATATTCTGGAGGGTATGGCCACTTAAAGATTTTGGACCTTTCTGGAAAAAATGA 501 0.4152 MGLRSLGPFGSFIKEGWEKAFAVGKFFCFLHVTNTYLITPVQTFGPSMLPAIDLTSTVFLAERISTRFGKVADGDIVVLRSPQNPRKFITKRLVGMEGDSVTYISPVNGDKQESVLIPKGHIWVQGDNMYKTNDSRNFGPVPYGLIESRIFWRVWPLKDFGPFWKK* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02630 166 Gene3D Umud Fragment, subunit A 33 165 - -
Rops3g02630 166 FunFam Inner membrane protease subunit 1 34 162 - -
Rops3g02630 166 Pfam Signal peptidase, peptidase S26 26 103 IPR019533 GO:0004252|GO:0006465
Rops3g02630 166 Pfam Signal peptidase, peptidase S26 110 155 IPR019533 GO:0004252|GO:0006465
Rops3g02630 166 SUPERFAMILY LexA/Signal peptidase 35 163 IPR036286 -
Rops3g02630 166 CDD S26_SPase_I 40 150 IPR019533 GO:0004252|GO:0006465
Rops3g02630 166 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 10 163 - -
Rops3g02630 166 NCBIfam signal peptidase I 27 157 IPR000223 GO:0006508|GO:0008236|GO:0016020
Rops3g02630 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 89 101 IPR000223 GO:0006508|GO:0008236|GO:0016020
Rops3g02630 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 36 52 IPR000223 GO:0006508|GO:0008236|GO:0016020
Rops3g02630 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 117 136 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02630 Rops-Chr3 55652007 55655691 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02630 48 163 MADS-box Gene Family AT1G29960 51.282 2.72e-42 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02630 K09647 - csin:114265272 220.705