LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops3g02626	ATGAGGTTGAGAAACATGGGGCCATTTGGGTCTTTTGCTAAAGAAGGATCGGAAAAGGCATTCACTGTTGCGAAGTTCTTCCGTTTTCTACATACCTTTGGTCCTAGCTTGCTTTCGGCAATTGATTTGACACCAAATGTGTTTTTAGCTGAAAGGATCTTTATCCGTTTTGGTAAAGCTACTCATGGAGATATTCTAGTGTTGTGCTCACCTCAAAACCCTAGAAAGTTTTTCACCAAATGCTTGGCTGGAATGGAGGGTGATGATTATATTTCTAGTCCCCGTAATGGTGATAAGCATGGAAATGTTTTGGGAGATAACATATATAATACCAATGATTCAAGAAATTTTGGTCCTGTTCCTTATGGCCTTATCGAGAGCAGGATATTCTGGAGGGTATGGCCACTTAAAGATTTTGGACCTTTCTAG	429	0.4009	MRLRNMGPFGSFAKEGSEKAFTVAKFFRFLHTFGPSLLSAIDLTPNVFLAERIFIRFGKATHGDILVLCSPQNPRKFFTKCLAGMEGDDYISSPRNGDKHGNVLGDNIYNTNDSRNFGPVPYGLIESRIFWRVWPLKDFGPF*	143

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops3g02626	142	Gene3D	Umud Fragment, subunit A	19	139	-	-
	Rops3g02626	142	SUPERFAMILY	LexA/Signal peptidase	45	142	IPR036286	-
	Rops3g02626	142	CDD	S26_SPase_I	47	129	IPR019533	GO:0004252\|GO:0006465
	Rops3g02626	142	PANTHER	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	24	141	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops3g02626	Rops-Chr3	55519772	55520741	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops3g02626	46	142	MADS-box Gene Family	AT1G29960	48.148	4.78e-29	101

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops3g02626	K09647		-	csin:114265272	145.206

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