Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02620 ATGACAAGAAGAAAGGTGAAACTTGCATTCATAGTCAATGACTCCGTAAGGAAGGCAACATTCAAGAAGAGGAAGAAGAGTTTGCTAAAGAAGGTGGATGAACTAAGCACCCTTTGTGGCATTGAAGCTTGTGCTATTATTTATAGCCCTTATGATCCTCAACCAGAGGTTTGGCCATCCCCATGGGGTGTCCAAAGTGTGCTTGCCAAGTTCAGGACAATGCCTGAATTGGAGCAAAGCAAGAAGATGATGAATCAAGAGACTTTCCTGAAACAAAGGATTCATAAGGCGAAAGAGCAGGTGAAGAAGCAGAGGAGGGACAACAGGGAGAAGGAGATGACCCTTCTCATGTTTCACTCCCTTAGTGCAGGGATGGTTCCTTATAATAACATGACCATGAATGATGTTGATGATCTTGTGTGGTTTATTGACCAGAACTTGAAGGATGTTAATCGAAGGTTGGAAACACTGAACAAAGATGCTCCTCAGATCATGATTCCAAGCCAACCCCAAATGGAACCAGCACCGGCACTGCCAGTGGCAAAGAATGAAGAAATGACGCCGAGGGTTCATGGCCATAGATTGGATATGCATACTGACAACATGCAAAATATGTGGTTCAAGGATATGATCAATGGCAATTGGGATGAGACCACATGCCATTTGGGATGA 672 0.439 MTRRKVKLAFIVNDSVRKATFKKRKKSLLKKVDELSTLCGIEACAIIYSPYDPQPEVWPSPWGVQSVLAKFRTMPELEQSKKMMNQETFLKQRIHKAKEQVKKQRRDNREKEMTLLMFHSLSAGMVPYNNMTMNDVDDLVWFIDQNLKDVNRRLETLNKDAPQIMIPSQPQMEPAPALPVAKNEEMTPRVHGHRLDMHTDNMQNMWFKDMINGNWDETTCHLG* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02620 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Rops3g02620 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Rops3g02620 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Rops3g02620 223 Gene3D - 13 119 IPR036879 GO:0003677|GO:0046983
Rops3g02620 223 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Rops3g02620 223 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Rops3g02620 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Rops3g02620 223 PANTHER MADS BOX PROTEIN 3 139 - -
Rops3g02620 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Rops3g02620 223 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Rops3g02620 223 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Rops3g02620 223 Coils Coil 87 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02620 Rops-Chr3 55394170 55394841 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02620 1 164 Type I MADS-box Gene Family AT5G48670 61.585 2.98e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops3g02620 SRF-TF 4.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02620 - - gmx:100813231 251.906