Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02617 ATGGCGGTTCCCACCTCATCGTTCGTCAGCAGCTCAACCAATTCATCAAGAGTGGAAAGCGCGTTTTGGGAGGTTGGTGATTCCCTCAAGAAGCTTCGCCAACACAAGCTCTATCAACCTGCTCTCAAGCTATCAGAAACCATGGCTAAGAGGAACATGAACAAGACCGTCAGTGACCATGCTATACATCTTGATTTGCTTGCAAAAGCTCGCGGTGTTGGGGCATATGTAAAATTAGATATGCTGGAGAAGGCTGAAGAGCTCAAGGAGCACGCTCGCAGGAGGAGGGGTGGCATCAGGTTCACCATCAATGGTCAGTCCTACTTCAACTTGGTCCTCATTACTAATGTTGGGGGTGCTGGTGATACCCATTGTGGGCACGTTCTGCATGTGCCATGCAAGAACAAGGAGTTTGCCTTCAACACGATGAAGCATCCAACCTTTCCAACGTTTTGCCATGTTTCTCTCGTGCATACGAGAGCCATGGGGTATTGCTGGTGTTACCAGGAAAGCTAA 516 0.4903 MAVPTSSFVSSSTNSSRVESAFWEVGDSLKKLRQHKLYQPALKLSETMAKRNMNKTVSDHAIHLDLLAKARGVGAYVKLDMLEKAEELKEHARRRRGGIRFTINGQSYFNLVLITNVGGAGDTHCGHVLHVPCKNKEFAFNTMKHPTFPTFCHVSLVHTRAMGYCWCYQES* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02617 171 PRINTS Expansin signature 109 130 IPR002963 GO:0009664
Rops3g02617 171 PRINTS Expansin signature 97 109 IPR002963 GO:0009664
Rops3g02617 171 PANTHER OS12G0527900 PROTEIN 23 74 - -
Rops3g02617 171 SUPERFAMILY PHL pollen allergen 95 130 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02617 Rops-Chr3 55192305 55192916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02617 94 124 Expansin Gene Family AT1G26770 93.548 3.14e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02617 - - gmx:100801616 95.9005