Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02610 ATGGCTGATGCCAGTCCTAGGACTGATATTTCTACAGATGGTGACACTGACGACAAAAATCAGCGGTATGATAGAAGTCTATCCCTTGTTGCCATGGCTTCTGACTCCAGTGACAGATCAAAGGATAAATCAGATCAGAAGAGTCTCCGCAGGCTTGCTCAGAATCGTGAGGCGGCAAGAAAAAGCCGATTGAGAAAGAAAGCTTATGTCCAACAATTGGAAAGTAGTCGTTTGAAGCTGACCCAGCTTGAGCAAGAGCTTCAGCGAGCTAGGCAGCAGGGAATCTTCATATCAAACTCAGGCGATCAGGCACATGCAATGAGTGGAAATGGGGCAATGCAATTTGATGCAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCTGAGAGCAGCTGTAAATTCTCATGCAAGTGATACCGAACTTCGCATGATTGTTGATGGTATATTGGCACATTATGATGAGATTTTTAAGCTGAAAGGTGTTGCAGCCAAGGCTGATGTTTTCCATTTGTTGTCTGGTATGTGGAAAACACCTGCTGAGAGGTGTTTTTTGTGGCTTGGTGGTTTTCGGTCATCTGAACTCCTCAAGCTCCTGGCAAATCAATTGGAACCTCTCACAGAGCAGCAGCTGATGGGTATTAGCAACTTGCAGCAGTCCTCCCAACAAGCAGAAGATGCGTTGTCTCAGGGAATGGAGGCATTGCAACAGTCCCTTGCAGAGACATTGTCCACTGGAGCACCTGCTTCATCTGGTTCATCAGGGAATGTGGCAAATTACATGGGTCAAATGGCCATGGCCATGGGTAAGCTAGGGACACTGGAGGGGTTTATTCGACAGGCTGACAATCTGCGCCAGCAGACTCTACAACAAATGCTCCGAATACTGACAACTCGCCAATCAGCTCGAGCACTCCTTGCCATTCATGACTACTTTTCACGGCTGCGTGCTCTCAGTTCACTCTGGCTGGCCCGCCCAAGAGATTGA 999 0.4755 MADASPRTDISTDGDTDDKNQRYDRSLSLVAMASDSSDRSKDKSDQKSLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNSGDQAHAMSGNGAMQFDAEYARWLEEQNRQINELRAAVNSHASDTELRMIVDGILAHYDEIFKLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLANQLEPLTEQQLMGISNLQQSSQQAEDALSQGMEALQQSLAETLSTGAPASSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMLRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02610 332 SUPERFAMILY Leucine zipper domain 47 90 IPR046347 GO:0003700|GO:0006355
Rops3g02610 332 Pfam Basic region leucine zipper 43 89 IPR004827 GO:0003700|GO:0006355
Rops3g02610 332 MobiDBLite consensus disorder prediction 1 49 - -
Rops3g02610 332 SMART brlzneu 43 106 IPR004827 GO:0003700|GO:0006355
Rops3g02610 332 Pfam Seed dormancy control 129 204 IPR025422 GO:0006351|GO:0043565
Rops3g02610 332 FunFam BZIP family transcription factor 46 95 - -
Rops3g02610 332 MobiDBLite consensus disorder prediction 10 24 - -
Rops3g02610 332 Gene3D - 46 98 - -
Rops3g02610 332 PANTHER TRANSCRIPTION FACTOR TGA9 20 331 - -
Rops3g02610 332 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 50 65 IPR004827 GO:0003700|GO:0006355
Rops3g02610 332 Coils Coil 123 143 - -
Rops3g02610 332 Coils Coil 66 93 - -
Rops3g02610 332 ProSiteProfiles DOG1 domain profile. 112 329 IPR025422 GO:0006351|GO:0043565
Rops3g02610 332 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 45 89 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02610 Rops-Chr3 55036117 55045560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02610 1 332 bZIP Transcription Factor Family AT3G12250 80.422 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops3g02610 DOG1 8.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02610 K14431 - gmx:100101881 570.081