Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02609 ATGGCTTCTTCAGTAGTAGGAGGAGGCAACAATGGGAACGGGGGTGTGGAGTGGCACGTGCGACCTGCAAACCCTAAGAACCCAATCGTGTTCTTCGATGTCACCATTGGTAACATTCCTGCTGGTAGAATCAAGATGGAGCTTTTCGCTGATATTGCCCCCAAAACCGCTGAGAATTTCAGGCAGTTCTGCACAGGGGAATACAGGAAAGCAGGACTGCCTGTGGGTTACAAGGGTTGTCAATTTCATAGAGTGATTAAGGATTTTATGATTCAGGCTGGTGATTTTGTAAAGGGCGATGGTAGTGGATGTGTTTCCATCTTTGGACACAAGTTTGACGATGAGAATTTTGTTGCCAAACACACTGGCCCTGGTCTTCTATCAATGGCAAATAGTGGACCAAATACCAATGGTTGTCAGTTCTTTATAACTTGTGCAAAATGCGACTGGCTTGATAACAAGCATGTTGTTTTTGGGAGAGTGCTTGGAGATGGTCTTTTGGTTGTTAGGAAGATTGAGAATGTGGCAACTGGACCCAATAACCGGCCAAAACTAGCTTGTGTCATTGCTGAATGTGGTGAAATGTAA 588 0.449 MASSVVGGGNNGNGGVEWHVRPANPKNPIVFFDVTIGNIPAGRIKMELFADIAPKTAENFRQFCTGEYRKAGLPVGYKGCQFHRVIKDFMIQAGDFVKGDGSGCVSIFGHKFDDENFVAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVIAECGEM* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02609 195 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 30 195 - -
Rops3g02609 195 PIRSF Peptidylpro_ismrse 17 195 IPR024936 GO:0003755
Rops3g02609 195 CDD cyclophilin_ABH_like 28 193 - -
Rops3g02609 195 SUPERFAMILY Cyclophilin-like 18 195 IPR029000 -
Rops3g02609 195 Gene3D - 17 195 IPR029000 -
Rops3g02609 195 FunFam Peptidyl-prolyl cis-trans isomerase 17 195 - -
Rops3g02609 195 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 31 194 IPR002130 GO:0000413|GO:0003755
Rops3g02609 195 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 32 193 IPR002130 GO:0000413|GO:0003755
Rops3g02609 195 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 77 94 IPR020892 GO:0003755|GO:0006457
Rops3g02609 195 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 48 63 IPR002130 GO:0000413|GO:0003755
Rops3g02609 195 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 125 140 IPR002130 GO:0000413|GO:0003755
Rops3g02609 195 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 82 94 IPR002130 GO:0000413|GO:0003755
Rops3g02609 195 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 140 152 IPR002130 GO:0000413|GO:0003755
Rops3g02609 195 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 153 168 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02609 Rops-Chr3 55021236 55028068 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02609 42 183 U-box Gene Family AT5G67530 45.455 1.33e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02609 K09567 - csv:101220045 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g02609 3 55021236 55028068 Rops3g02609 3 55021236 55028068 ECH