Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02597 ATGGTAAAGGGCAAGGAGAAAGAGCAGGCACTTTCTTATTTGGGAGGAAAGGAATATAAGATTGCCATGGAAGAAAACAAGAAGTGGATGCATAAGGAGATAGAAAGACAAAGAAGGCAAGAGATGGGGAAAGTCTGCAACACCCTTAGATCTCTTCTGCCTTTGGAATATATCAAGATTAGAAATTTGAAAGCCATTTGGGGTGCTTTTATTGCATATCTTGATGACCATCAACAGGGAAAACGATCAACATCTGATCATATGCATGAAGTTATGAATTATATCAACCACCTACAAGACAAGGTGAAGCAATTGCAAGCCAAGAGGGATGAGTTAACAAAAGTGTCTAATTTGAGTACTATTGACCCTTATGAGAATGGAAGCTCAACAACCCATCTTCCACCCTTTGTTATTGTTCATCCTTGCCCTGGAGGCCTTGAAATTATGTGCAGCTACAGCTTCAAGAATTGTGTGTTTCCTTTGTCAAGAGTTCTAGACATGTTACTTAAAGAAGGGCTTAATGTGGTAACCAGTACTTCCACCAAAATAAATGGCAGATTCATACACACTATACAATCAGAGGATGAGGAAGCCAAGATTTTTCTGATTCCTGATTTTTGTTCATCAGTGAGTAGAGCTGGGAACTTGATGTTGAACTTTATCCTCAAGTTCCCCTTCTTTTATGGATCCTTAGGGAGTGGCATTCCTTCTTTTGGGACAACCTCCTCATAG 732 0.3975 MVKGKEKEQALSYLGGKEYKIAMEENKKWMHKEIERQRRQEMGKVCNTLRSLLPLEYIKIRNLKAIWGAFIAYLDDHQQGKRSTSDHMHEVMNYINHLQDKVKQLQAKRDELTKVSNLSTIDPYENGSSTTHLPPFVIVHPCPGGLEIMCSYSFKNCVFPLSRVLDMLLKEGLNVVTSTSTKINGRFIHTIQSEDEEAKIFLIPDFCSSVSRAGNLMLNFILKFPFFYGSLGSGIPSFGTTSS* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02597 243 SMART finulus 32 104 IPR011598 GO:0046983
Rops3g02597 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 25 115 IPR036638 GO:0046983
Rops3g02597 243 Coils Coil 88 115 - -
Rops3g02597 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 26 98 IPR011598 GO:0046983
Rops3g02597 243 Gene3D - 17 115 IPR036638 GO:0046983
Rops3g02597 243 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 25 197 - -
Rops3g02597 243 CDD bHLH_AtORG2_like 27 120 - -
Rops3g02597 243 Pfam Helix-loop-helix DNA-binding domain 28 99 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02597 Rops-Chr3 54447263 54449848 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02597 31 194 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 37.870 1.22e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops3g02597 HLH 2.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02597 - - ccaj:109791323 240.736