Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02559 ATGGCATCCTCAAATTCACCATGTGCAGCATGCAAGTTTCTACGCAGAAAATGTCAACCAGAGTGTGCTTTTGCACCATACTTCCCACCTGATCAGCCTCAAAAATTTGCAAACGTTCATAGAATTTTTGGGGCAAGCAATGTGACAAAGCTTCTCAATGAGTTGCACCCTCACCAACGTGAAGATGCAGTGAATTCCCTTGCTTATGAAGCTGAGATGAGGCTCCGTGACCCTGTTTATGGTTGTGTTGGAGTCATATCTCTTCTTCAACATCAACTTCGTCAACTCCAAATGGATCTTTATTGTGCCAAATCCGAGCTCTCTAGATACCAAAATTTGAACATCACCACCAACCATGGTCTCATAGCCGGTGGTGAATCTGCGGTCACGACCAGTTATCACCATCCACAAAGCGTGAGTGGTAGTATCGGTCGTGACCATTATCATCATCATCACCACCACCTTCACCATCACCAGTTTTTTACAAGGGACCAACAAAACATGGTTAGAAACTTTGATGGGAACAACTATGATGCTAGTCTCTTGGCCATGAACATATCTGCTAGCTTAGGGCAACTCAATCAGCTTCAACAGCACACTGCTGCTGGCGGCGGAGGTGATGACCGCCGCACCGTCAACCGCTCCTAG 648 0.463 MASSNSPCAACKFLRRKCQPECAFAPYFPPDQPQKFANVHRIFGASNVTKLLNELHPHQREDAVNSLAYEAEMRLRDPVYGCVGVISLLQHQLRQLQMDLYCAKSELSRYQNLNITTNHGLIAGGESAVTTSYHHPQSVSGSIGRDHYHHHHHHLHHHQFFTRDQQNMVRNFDGNNYDASLLAMNISASLGQLNQLQQHTAAGGGGDDRRTVNRS* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02559 215 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Rops3g02559 215 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Rops3g02559 215 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02559 Rops-Chr3 53680559 53681206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02559 2 215 AS2 family AT1G65620 64.516 3.87e-80 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops3g02559 LOB 2.4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02559 - - mtr:25501092 346.665