Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02549 ATGGAATCAAGCTTTGGTTTTTTCTTTTATGTTGTTGCTATTTTTCACACAAGAATGTTAGCATGTGATCAGTATGAAAAAGTTATATCAACTGCTTATCATAGAGGTTTATCAGTGATTGAGGTGCTTGTGGTGATTCTACTTGTGCTAACAGTGGCTGTCATTGGGGCATGTTTGGAAGCAGATCATAAACCTAAAGATGGGTGGGTTAGACTATTTCATGATGGATGGGTCTTACTTGAGGGTGATGTTAGGGTGGACCAGTTGGAAACTGCTTCAAAGTGTGTAAAACCTTGGCACCCTCCCGCTGCTGTGCGTCGCCGCACGCACCCTCCCGCTCGTGCGTCGCTTCGCACTCTCCCGCTGTTCGGTGAAAATAATGAACCTTATGAACAAAATGACGTTGCTGGTTTAGGTGGAATGAAAGGAATTGGAGACTTTGGTGACAATGAAAAGGATGGTGACAATGAAATGGATGATGACAATGAAAGAGATGATCATAATGAAATGAATGTTGAGCATGAAACTGGAGTTTTTGGTGACAATGAAATGGATGTTGACTATGAGATTGAACCCATTGGTGTCATTGAAGTTGATGGTGAGCACAGAATTGATGTGGAGCAAGGGATGGTATGTGATGAAGGTATAACAGTGGATCATATGCAGGACATTGGAAAAATAAATTGGGAGTCATTAAGGCCAGATGAGGTAAAAAAGTATCATTTTTCTAATATTGGGGTGGCATATCTGTTTTATAATGAATATGCAAGATCGTGTGGTTTTGGTGCTCGCAAAAGTAAGGTTTTAAGAAATAAAAAAGGAGAAATCATACAACAAGTGTTTGTTTGTCATAGAGAAGGATTTAGAGAAGCAAAGAATTTAAATAGGGAAAATCGCAAGCGTGAGGCTAAACTTTTGACAAGGTGTGGGTGTAATGCAAAGATGAAGGTTCATGTTGATGGAGAAAGTGGGCGGTGGCATGTTACATATTTTTGTGATGACCACAATCATGTATTATTAGCTGGAAAGCATTCATCAATGTTACCGGCTCATAGGTGCATGAGTGAAGATGATATTGTTCAAATGAATAATATGCGAAAGGTGGGTATTAGCACACCTCATATTTATGGCTGCTTTGGTAACCAATCAGGAGGTTTTGATAAGGTTGGATTTCGTAAACGGGACATGTACAATCAAATTGATAAGCAACGACATATGGAAATTGGTGATGCAAAGGCTGCATTAGCTTATCTTAAAGATGTTGGTTTGTATGATCCAGGGTTGTTTTGGAGGCATACTTTAGATTCAGAGGAAAAAACAAGTATCGTTGCCCTGTTGTGA 1341 0.3952 MESSFGFFFYVVAIFHTRMLACDQYEKVISTAYHRGLSVIEVLVVILLVLTVAVIGACLEADHKPKDGWVRLFHDGWVLLEGDVRVDQLETASKCVKPWHPPAAVRRRTHPPARASLRTLPLFGENNEPYEQNDVAGLGGMKGIGDFGDNEKDGDNEMDDDNERDDHNEMNVEHETGVFGDNEMDVDYEIEPIGVIEVDGEHRIDVEQGMVCDEGITVDHMQDIGKINWESLRPDEVKKYHFSNIGVAYLFYNEYARSCGFGARKSKVLRNKKGEIIQQVFVCHREGFREAKNLNRENRKREAKLLTRCGCNAKMKVHVDGESGRWHVTYFCDDHNHVLLAGKHSSMLPAHRCMSEDDIVQMNNMRKVGISTPHIYGCFGNQSGGFDKVGFRKRDMYNQIDKQRHMEIGDAKAALAYLKDVGLYDPGLFWRHTLDSEEKTSIVALL* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02549 446 Pfam FAR1 DNA-binding domain 251 340 IPR004330 -
Rops3g02549 446 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 156 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02549 Rops-Chr3 53351621 53354994 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Rops3g02549 FAR1 5.7e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02549 - - tpra:123913749 247.669