Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02543 ATGTCTTCGTCTCAATTTCATGCTTTTGGTGCGGTTCAAGGTATAGAACATGAGGTGGAAATGGTGAGCGGCTACGATGGCTCAGAGCGATTTGATCTCATCACGCTGATTTTGTCTGTGCCAATTAGGTATGTTGGAAGTTTAATGGAAGAAAAGTATGAGAATGCTCAAATCCTCATTTGTCCTGTGGGATATTATTTGAAGATAAAGTTAATATTGAAGAAGATAAATAGTGGATCCGGTGGAGTCACTGAGATTGTTGATGATTTTGAGCTTCCTCAAGAAGAAGCTGTTGACATAAAATACATGGAAGTCAACAAGCTCAAGTTGACCAGATGTATTAACTACTTCGAGATTGAGCTTCAAAATCTATGTTGCGAAGGAAAGAAACTCCTTGTTCTTGATATTGATTACACCTTCTTTGATCACTGCTCCACCGCCGAAAACCCTTTTCAACTTATGAGACCTTACCTTCATGAGTTTCTTACATCAGTTTATTCCGAGTATGACATTAGGATTTGGTCTGCTACCAGCATAAAGTGGATTAACCTCAAGATGAGAGAACTTGGGGTTCTGGACAATCCTAACTACAAAATCACCGCACTTCTTGACCACTTAGCTATGATCACTGTTCAATCTCCTTCTTGTGGGGTCTTTGATTGCAAGCCACTTGGTTTGATCTGGGCTAAGTTCCCTGAGGGAGTGTTCTTGAAGAAGGAAAGGTTTTTCTTTCAAATGGTAAACACCAGAAGTGAACAAAGGGGTGATTCAAGAATGGAGGCTTTGGAAAGAAGATTGGAAGAAGAGGAAACTCGTCGTCAGAGCATCGAGGTTCGCATGCAAAGGATGGAAAATTCAATGGAGAACCGTTTCAGACAAGTTGATGGTGTTTTGCAGGAGGTACTGCGTAAATTGGAGGCTATTGAGTGCTCCACCGCTCGTACAGGAGGGAGGGGATTAGAGAGGAGGAACAAGAAGCATCGGGTCCAAGCCATGTATCTGGACACAGTGAGATATGGAGGAAAATCGAGCTTCCTCTGTTTACAGAAGATGATGTCATTGGCTGGGTTGAAGCAAGAGGGCAATGTAAGGGAATATAGGAACAAGTTTGAGGTCTTGGCAACACCACTTAAGGATTCAGAGCATGCATTCTTACCTGGAATTTTTTTGAATGGGTTGAAAGAGGATATTCCGATATTCCTCGACAAGGAACCTCTAGACTGGATCACTTTTGAGCTCATGCGAGAATCCACCGAGGCCTTTACGGATGATGATCACGACATTTTGTTGAATAACAAACCTCAGAGATCTGATGAAGAAATCGACGGTGCTGATGATTTTTACTCACTTCAGAAGATGCCTCCTGAAATCAAGTGTTACTTATGA 1386 0.4199 MSSSQFHAFGAVQGIEHEVEMVSGYDGSERFDLITLILSVPIRYVGSLMEEKYENAQILICPVGYYLKIKLILKKINSGSGGVTEIVDDFELPQEEAVDIKYMEVNKLKLTRCINYFEIELQNLCCEGKKLLVLDIDYTFFDHCSTAENPFQLMRPYLHEFLTSVYSEYDIRIWSATSIKWINLKMRELGVLDNPNYKITALLDHLAMITVQSPSCGVFDCKPLGLIWAKFPEGVFLKKERFFFQMVNTRSEQRGDSRMEALERRLEEEETRRQSIEVRMQRMENSMENRFRQVDGVLQEVLRKLEAIECSTARTGGRGLERRNKKHRVQAMYLDTVRYGGKSSFLCLQKMMSLAGLKQEGNVREYRNKFEVLATPLKDSEHAFLPGIFLNGLKEDIPIFLDKEPLDWITFELMRESTEAFTDDDHDILLNNKPQRSDEEIDGADDFYSLQKMPPEIKCYL* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02543 461 NCBIfam HAD-IIID family hydrolase 109 233 IPR011943 GO:0004721|GO:0005634
Rops3g02543 461 SMART forpap2 128 249 IPR004274 -
Rops3g02543 461 SUPERFAMILY HAD-like 120 197 IPR036412 -
Rops3g02543 461 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 119 273 - -
Rops3g02543 461 Coils Coil 252 286 - -
Rops3g02543 461 Pfam NLI interacting factor-like phosphatase 130 211 IPR004274 -
Rops3g02543 461 Gene3D - 82 240 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02543 Rops-Chr3 53166357 53181217 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02543 412 460 Core DNA Replication Machinery Family AT4G02060 51.020 7.66e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02543 K17618 - gmx:100785704 254.218