Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02538 ATGAATGAGGCCTTGAGACTGAGTTGTAAGAAAGGTTATCCAGTTCGTGTTGTCAGATATTTGTTTATGAGATGTGACAATGAACCAGCACCATGGACAAGTGATCTTTGTGGAGACCGCCCCCGCCCACTGCCTGAAATTGAAGAACTGAAAGGTGCAATTGATATAACTGAAAGGAAGGGTGCTCCATCATGGGATTATGATGTAAGTGTTGCTGTCTACTCAGGTTTGTCAGTGCATTTGATTGAATTTCAGGAGGAAAAGGGCTGCTGGTTGTGGGAGAAGCCTCCACCACCAAGCAAGAAATCAATAGACATTGTAAACCCTGAAGATGGGACAAAAGTAAGAGTTAAAAGAAAAGCAAAAACTTTGTCTGTCAAAGAAAGGCTATTGAGAGAGTTTGGTTGCCATATCTGTCACAAGGTGTTGGCTTTCCCTTTTACTACATCTTGTGCTCACAACTTCTGCAAAGCCTGCTTGGAGGGTGCCTTCTCTGGCCAAAGTTTCATCAGGAAGAGGGCATGTGAAGGTGGACGCACTTTAAAGGCACAAAAGAACATTATGAAATGCCCATCATGTTCAAATGACATAGATGACTTTCTTCAGAATCCACAGGTTAACAGAGAAATGAGGGGTATTATAGAATCACTCCAGCTCCAGGCTGAACAGGTGCAGGAGAATTCGGAAGAGTCAAGTGATAAAAATGATGAGAATCTGAATGATGGAACAAAAGTTTCAAAGCCCAGTGATTCAAGTGAAAATGTCTTGGAGGAAATTAAAGACAATGATCTGAATCAGCCCGACAAGCGGAAGAAAGGTGGTAGTAGTACGGTTGTGAACGTAGAGGAACTTATTGATGAGGCATGA 867 0.4245 MNEALRLSCKKGYPVRVVRYLFMRCDNEPAPWTSDLCGDRPRPLPEIEELKGAIDITERKGAPSWDYDVSVAVYSGLSVHLIEFQEEKGCWLWEKPPPPSKKSIDIVNPEDGTKVRVKRKAKTLSVKERLLREFGCHICHKVLAFPFTTSCAHNFCKACLEGAFSGQSFIRKRACEGGRTLKAQKNIMKCPSCSNDIDDFLQNPQVNREMRGIIESLQLQAEQVQENSEESSDKNDENLNDGTKVSKPSDSSENVLEEIKDNDLNQPDKRKKGGSSTVVNVEELIDEA* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02538 288 ProSiteProfiles Zinc finger RING-type profile. 136 194 IPR001841 -
Rops3g02538 288 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 1 19 IPR045134 -
Rops3g02538 288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 248 IPR013083 -
Rops3g02538 288 SMART ring_2 136 193 IPR001841 -
Rops3g02538 288 Coils Coil 207 234 - -
Rops3g02538 288 MobiDBLite consensus disorder prediction 223 288 - -
Rops3g02538 288 ProSitePatterns Zinc finger RING-type signature. 151 160 IPR017907 -
Rops3g02538 288 ProSiteProfiles YDG domain profile. 1 63 IPR003105 -
Rops3g02538 288 MobiDBLite consensus disorder prediction 227 243 - -
Rops3g02538 288 Pfam RING-type zinc-finger 136 191 IPR027370 -
Rops3g02538 288 SUPERFAMILY PUA domain-like 1 58 IPR015947 -
Rops3g02538 288 MobiDBLite consensus disorder prediction 251 270 - -
Rops3g02538 288 SUPERFAMILY RING/U-box 128 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02538 Rops-Chr3 52993670 52995657 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02538 1 224 C2H2 Transcription Factor Family AT5G39550 46.212 4.17e-68 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02538 K10638 - gmx:100781044 367.851