Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02524 ATGGCCACTGAAAAGCTTAGTAGTTGTGCAAAATTTCTTGAAAACTCTAAACCCTACTTTGCCATGATTCTTTTACAGTTTGGCTATGCTGGCATGAACATTATTGCTAAGCTTTCTCTCAACCAAGGAATGAGTCACTATGTCCTTGTGGTTTATCGCCATGCCTTTGCAACTGCTTGCATCACTCCATTTGCCTTCATTTTTGAAAGGAAAGGTCAACCAAAGATAACATTCCCAGTTTTCAAGCAAATTTTCATCCTAGGTCTACTCGGGCCTGTGATTGATCAAAATTTCTACTATGCTGGGTTGAAGCTCACATCTCCAACCTTCTCTTGTGCAATGAGCAACATGCTTCCAGCCATGACTTTTGTCATGGCAATTTTATGCCGGATGGAGAAGATAAACATAAAGAAGGTGAGATGCCAAGCAAAGATAGTGGGAACATTAGTGACAGTGGCTGGGGCATTGTTTATGACCTTATACAAAGGACCTATTGTGGAGATGGTATGGGCCAAACATGGCCATCCTTATCAAAAGACCTATGAAACAAGAATGACAGGATCCTCAGAAAAATATTGGTTCTTAGGCTGCATCTTCCTTATCATTGCCACTCTTGCCTGGGCTTCCCTCTTTGTTTTGCAAGCCAAAGCTATAGAAATATACAAGAATCATCAGCTAAGCCTCACTTCACTTGTTTGTTTCATAGGCACTCTTCAATCTGCTTTTGTTGCTTTGGTTGCGGAGAACAATCTTTCTGTATGGAAAATTGGCTGGGATATGAACTTACTAGCTGCTGCCTATGCTGGGATTGTGACCTCAAGCATATCATACTATGTACAAGGGTTGGTGATCAAGAAGAAAGGGCCTGTGTTTGCAACTTCCTTTAGCCCTCTAATGATGATCATTGTTGCCTTCATGGGTTATTTTATCCTTAAAGAACAGATTTATCTTGGAGGTGTGATTGGTGCCATCTTGATTGTTATAGGCTTACACACTGTTCTGTGGGGAAAGAACAAAGAACTAATAGAGAGTAAAGTGGCAGATGATATTCCTCTGGCTGTAAAGGGTGCTCAAATGGCTGGAATTGCAGGGCCAGTGATTGATGGTACAGATCAATTTACTGAAGTGAAATCTAGTCAGATAGGAGAAGCCAACAACAATCTCTCTTCAGCTACAATAAGCATACCTATTAGAGAGCCTATAAAATTTAACCAAGAAGAAAGGGCTTAA 1230 0.4073 MATEKLSSCAKFLENSKPYFAMILLQFGYAGMNIIAKLSLNQGMSHYVLVVYRHAFATACITPFAFIFERKGQPKITFPVFKQIFILGLLGPVIDQNFYYAGLKLTSPTFSCAMSNMLPAMTFVMAILCRMEKINIKKVRCQAKIVGTLVTVAGALFMTLYKGPIVEMVWAKHGHPYQKTYETRMTGSSEKYWFLGCIFLIIATLAWASLFVLQAKAIEIYKNHQLSLTSLVCFIGTLQSAFVALVAENNLSVWKIGWDMNLLAAAYAGIVTSSISYYVQGLVIKKKGPVFATSFSPLMMIIVAFMGYFILKEQIYLGGVIGAILIVIGLHTVLWGKNKELIESKVADDIPLAVKGAQMAGIAGPVIDGTDQFTEVKSSQIGEANNNLSSATISIPIREPIKFNQEERA* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02524 409 SUPERFAMILY Multidrug resistance efflux transporter EmrE 255 338 - -
Rops3g02524 409 PANTHER WAT1-RELATED PROTEIN 18 341 IPR030184 GO:0016020|GO:0022857
Rops3g02524 409 Pfam EamA-like transporter family 195 333 IPR000620 GO:0016020
Rops3g02524 409 Pfam EamA-like transporter family 18 159 IPR000620 GO:0016020
Rops3g02524 409 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02524 Rops-Chr3 52179596 52182631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02524 1 399 Nodulin-like Gene Family AT5G07050 61.594 7.45e-178 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02524 - - gmx:100804390 637.491