Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02517 ATGGGTGAGTTAAATTTGAGTTCTACTAAGAGAAGGTATGGCCTGGTGCAATGCACCAGAGATCTTACAAATGAGGGGTGCAGACAGTGTTTGGAGGCCATGTTAGCACAAGTTCCTAAATGTTGTGCACATAAGATGGGGTGGCAGGTTGGGGCTGAGAGTTGTCTGATTAAGTATGATGATTATATGTTCTACCTTTCTCCAAATCAAGCATCTTCAGTTCCTGTGCCTAATCTGCAACCAGCCAGACAAGGGGGTACTGGTAAGTCAAGAAACTTGATCATTGGCTTAAGTGTGCCGGGGTCGGTAGCTCTACTATGTTTCAGTGTCTACTGCTTCTGGAGCAGGAGGAATAGAGTTAGAAAAGATGGGATACTTGATACCATTCCTCTATCTCCAAATGAGGAAACATTGAATGCAGACCTGCCTACAATCCCATTAATCACAATTCTTCATAGTACTAATAACTTTTCAGAAGCATCTAAATTAGGGCAAGGTGGATTTGGCCCCGTTTACAAGGGAATTCTACCAGATGGAAGACAAATTGCAGTCAAAAGGCTCTCAAAAGCTTCTGGTCAAGGCTCGGAGGAGTTCAAGAATGAAGTAATGTTTATAGCTAAATTGCAGCATCGCAACCTTGTAAGACTTTTGGCATGCTGTTTGGAGGAAAATGAAAAGATACTTGTATACGAGTATATGTCGAATGCAAGTCTCGACTTTCACCTGTTTGATTATGAAAAAAGAAAGCAACTCGATTGGAAACTAAGATTAAGCATTATCAATGGAATAGCAAGAGGTATTTCATACCTTCATGAGGACTCTCGACTCAAAGTAATTCATAGAGATCTCAAAGCCAGTAATGTTCTATTAAACAATGAGATGAATCCCAAAATTTCTGATTTTGGATTGGCAAGAGCATTTGAAACAGGCCAACATCAGGCAAATACAAATCGAGTAATGGGTACCTATGGATACATGGCTCCGGAATACGCTATGCAAGGATTATTTTCAGTCAAATCAGACGTTTTCAGCTTTGGAGTACTTGTTTTAGAAATCATTTGTGGGAAAAAGAATAGTGGATTCTATCTGTCAGAACATGGTCTAAGTCTTCTTTTATATACATGGAAAATATGGTGCGAAGGAAAATGTTTGGAATTGATGGATTCAGTACTGGAAGAAACCTGCAAAGCCAGTGAAGTTGTGAAGTGCATACACATTGGTCTATTGTGCGTTCAAGAAGATGCAGCAGATAGACCAACCATGTCCACTGTTGTTGTAATGCTGGCGAGTGACACAATGGCCCTTCCAAAACCAAAACCACCAGCATTTTCAGTTGGAAGAATGACTTTAGAGGAAGCATCTACTTCAAAACGTTCCAAGAATCTTTCTAATAATGATAAGATCTTGGAACATGATGAAGAGCTTATGGCAAATCAACATCATTTTACACCTTGGACAGATTCTAAGAAGGAGATTCCTGAGTGGTCGTCTAAATCTTGA 1500 0.3993 MGELNLSSTKRRYGLVQCTRDLTNEGCRQCLEAMLAQVPKCCAHKMGWQVGAESCLIKYDDYMFYLSPNQASSVPVPNLQPARQGGTGKSRNLIIGLSVPGSVALLCFSVYCFWSRRNRVRKDGILDTIPLSPNEETLNADLPTIPLITILHSTNNFSEASKLGQGGFGPVYKGILPDGRQIAVKRLSKASGQGSEEFKNEVMFIAKLQHRNLVRLLACCLEENEKILVYEYMSNASLDFHLFDYEKRKQLDWKLRLSIINGIARGISYLHEDSRLKVIHRDLKASNVLLNNEMNPKISDFGLARAFETGQHQANTNRVMGTYGYMAPEYAMQGLFSVKSDVFSFGVLVLEIICGKKNSGFYLSEHGLSLLLYTWKIWCEGKCLELMDSVLEETCKASEVVKCIHIGLLCVQEDAADRPTMSTVVVMLASDTMALPKPKPPAFSVGRMTLEEASTSKRSKNLSNNDKILEHDEELMANQHHFTPWTDSKKEIPEWSSKS* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02517 499 CDD STKc_IRAK 163 428 - -
Rops3g02517 499 Gene3D Transferase(Phosphotransferase) domain 1 233 435 - -
Rops3g02517 499 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 9 465 - -
Rops3g02517 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 278 290 IPR008271 GO:0004672|GO:0006468
Rops3g02517 499 Pfam Protein tyrosine and serine/threonine kinase 160 427 IPR001245 GO:0004672|GO:0006468
Rops3g02517 499 FunFam cysteine-rich receptor-like protein kinase 10 233 435 - -
Rops3g02517 499 Gene3D - 1 64 IPR038408 -
Rops3g02517 499 ProSiteProfiles Gnk2-homologous domain profile. 1 64 IPR002902 -
Rops3g02517 499 Pfam Salt stress response/antifungal 9 62 IPR002902 -
Rops3g02517 499 SUPERFAMILY Protein kinase-like (PK-like) 143 451 IPR011009 -
Rops3g02517 499 Gene3D Phosphorylase Kinase; domain 1 130 232 - -
Rops3g02517 499 ProSiteProfiles Protein kinase domain profile. 157 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g02517 499 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 127 232 - -
Rops3g02517 499 SMART serkin_6 157 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g02517 499 MobiDBLite consensus disorder prediction 479 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02517 Rops-Chr3 52078738 52081568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02517 5 448 Receptor kinase-like Gene Family AT4G05200 50.435 5.79e-150 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops3g02517 PK_Tyr_Ser-Thr 6.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02517 - - gmx:100796972 734.561