LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops3g02512	ATGGAGGGAATACAAAACTTGAGATCAATGTCCTATGCTTTCTTGCTATTATTGCTGAGCTTCAGACCACTCATTACAAAGGCACAATCCCCCAATTACGTGGGGGATTTCTGTCATAACACTCCCCAAACAGCTCTCAGCAGTGCATACAAAACCAATCTTAACAGCGTCCTCTCATGGCTATCCTCTGATTCAGCCACAAGCAAAGGTTATAACCGCACCAGCATAGGTAACAACACCTCAGGAGATGCAGTGTATGGCCTCTATGATTGCCGTGGTGATGTGGTTGGATACTTCTGTCAATTCTGTGTCTCTACTGCTGCAAGAGATGTTCTTCAGCGCTGCCCCAATAGAGTTTCTGCTTCCATATGGTATGATTTCTGCGTTCTCAGATACTCAAATGAGAACTTCTTTGGGAAAGTTACAATAGATCCTTCATGGCATAATGTCGGAACAAAAAACATCTCCAGTGCAATAGAGATTCAGAAAGGTGAGGATTTTATGAGAAGTTTGATCAGAAGAGCAACAACTAAGGGAACCAACAGGTTGTTCTATACAGGTGAGTTCAATTTGAGTTCTACTGAGAGAAGGTATGGCCTGGTGCAATGCACCATGGATGTTACAAATGAGGGGTGTAAACAGTGTTTGGAGGCCATGTTAGCACAAGTTCCCAAATGTTGTGCACAAAAGATGGGGTGGCTGGATGGGTCTTCAAGTTGTCTGATGAAGTATGATGACTATATGTTCTACCTTTTGCCAAATCAAACATCTTCAGTTCCTGTGCCTGATCTGCAAACAGCCAGACAAGGGGGTACTAGTAAGTCAAGAAACTTGATCGTTGGCTTAAGTTTGCCGGGGTCTGTAGCTCTACTATGTTTCAGTGTTTACTGCTTCTGGCGCAGGAATAGAGTTCGAAAAGATGGGCTAATACTTGATACCATTCCTCTATCTCCAAACGAAGAAACACTGAATGCAGACCTGCCTACAATCCCATTAATCACAATTCTTCATAGTACTGATAACTTTTCATTAGCATCTAAGTTAGGGGAAGGTGGATTTGGCCCTGTTTACAAGGGAACTCTACCTGATGGAAGACAAATTGCAGTTAAAAGGCTCTCTAAAGCTTCAGGTCAAGGCTCGGAGGAGTTCAAGAATGAAGTAATGTTTATAGCTAAATTGCAACATCGCAACCTTGTCAGACTTTTAGGATGCTGCTTGGAGAAAAATGAAAAGATACTTGTATATGAGTATATGTCAAATGCAAGTCTCGACTTTCACCTGTTTGATAAAGAAAAGAGAAAGCAACTTGATTGGAAACTAAGATTAAGCATTATCAATGGAATAGCAAGAGGTCTTTTATACCTTCATGAGGACTCACGACTGAAAATAATTCACAGAGATCTCAAAGCTAGCAATGTTCTATTGGACAATGAGATGAATCCCAAAATATCCGATTTTGGATTGGCAAGAGCTTTTGCAACAGGCCAGAATCAGGCAAATACAAATCGAGTAATGGGTACCTATGGATACATGGCTCCAGAATATGCAATGGAAGGATTATTTTCAGTCAAGTCTGATGTTTTCAGCTTTGGAGTACTTGTTTTAGAAATCATTTGTGGGAAAAAGAATAGTGGATTCTATCTGTCAGAACATGGTCAAAGTCTTATTTTATTTACATGGAAAAAGTGGTGTGAAGGAAAATGTTTGGAATTGATGGATTCAGTTTTGGAAGAAACCTGCATAGCCAATGAAGTTGTGAAGTGTATACACATTGGTCTATTGTGTGTTCAAGAAGATGCAGCAGATAGACCAACCATGTCAACTGTTGTTGTTATGCTGGCAAGTGACACAATGGCACTTCCAAAAGCAAAACCACCAGCATTTTCAGTTGGAAGAATGACTTTAGAGGAAGCATCTACTTCGAAAAGTTCCAAGAATCCTTCTATTAATATTGTAACAGTCTCTAACATTTCACCAAGGTAA	1983	0.4029	MEGIQNLRSMSYAFLLLLLSFRPLITKAQSPNYVGDFCHNTPQTALSSAYKTNLNSVLSWLSSDSATSKGYNRTSIGNNTSGDAVYGLYDCRGDVVGYFCQFCVSTAARDVLQRCPNRVSASIWYDFCVLRYSNENFFGKVTIDPSWHNVGTKNISSAIEIQKGEDFMRSLIRRATTKGTNRLFYTGEFNLSSTERRYGLVQCTMDVTNEGCKQCLEAMLAQVPKCCAQKMGWLDGSSSCLMKYDDYMFYLLPNQTSSVPVPDLQTARQGGTSKSRNLIVGLSLPGSVALLCFSVYCFWRRNRVRKDGLILDTIPLSPNEETLNADLPTIPLITILHSTDNFSLASKLGEGGFGPVYKGTLPDGRQIAVKRLSKASGQGSEEFKNEVMFIAKLQHRNLVRLLGCCLEKNEKILVYEYMSNASLDFHLFDKEKRKQLDWKLRLSIINGIARGLLYLHEDSRLKIIHRDLKASNVLLDNEMNPKISDFGLARAFATGQNQANTNRVMGTYGYMAPEYAMEGLFSVKSDVFSFGVLVLEIICGKKNSGFYLSEHGQSLILFTWKKWCEGKCLELMDSVLEETCIANEVVKCIHIGLLCVQEDAADRPTMSTVVVMLASDTMALPKAKPPAFSVGRMTLEEASTSKSSKNPSINIVTVSNISPR*	661

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops3g02512	660	Gene3D	-	147	249	IPR038408	-
	Rops3g02512	660	Gene3D	-	32	137	IPR038408	-
	Rops3g02512	660	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	46	659	-	-
	Rops3g02512	660	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	312	417	-	-
	Rops3g02512	660	ProSiteProfiles	Gnk2-homologous domain profile.	32	137	IPR002902	-
	Rops3g02512	660	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	463	475	IPR008271	GO:0004672\|GO:0006468
	Rops3g02512	660	SMART	serkin_6	342	618	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops3g02512	660	ProSiteProfiles	Protein kinase domain profile.	342	618	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops3g02512	660	Pfam	Domain of unknown function (DUF3403)	615	660	IPR021820	GO:0004674
	Rops3g02512	660	FunFam	Liguleless narrow1	418	621	-	-
	Rops3g02512	660	CDD	STKc_IRAK	348	613	-	-
	Rops3g02512	660	ProSiteProfiles	Gnk2-homologous domain profile.	143	249	IPR002902	-
	Rops3g02512	660	FunFam	Cysteine-rich receptor-like protein kinase 28	34	136	-	-
	Rops3g02512	660	Pfam	Salt stress response/antifungal	166	247	IPR002902	-
	Rops3g02512	660	Pfam	Salt stress response/antifungal	38	134	IPR002902	-
	Rops3g02512	660	Gene3D	Phosphorylase Kinase; domain 1	315	417	-	-
	Rops3g02512	660	Pfam	Protein tyrosine and serine/threonine kinase	344	612	IPR001245	GO:0004672\|GO:0006468
	Rops3g02512	660	SUPERFAMILY	Protein kinase-like (PK-like)	328	645	IPR011009	-
	Rops3g02512	660	Gene3D	Transferase(Phosphotransferase) domain 1	418	623	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops3g02512	Rops-Chr3	51870755	51876293	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops3g02512	15	647	Receptor kinase-like Gene Family	AT4G05200	44.444	0.0	533

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Rops3g02512		PK_Tyr_Ser-Thr	3.4e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops3g02512	-		-	gmx:100795922	1022.69