Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02501 ATGAATTTTCCTAGCTTCATCCTCCTCATTCTCTTCACCACAACAAGTGCACAATCTCCAATTTACATTTACAACTTTTGCCAGAACTCAACAGGAAAATCAGTCAGCACTTCATATCAAACTAATGTTAACAACTTCCTCTCATGGGTAACCTCTGATTCAGCCACAAGTGGAGGATATAACCAAACCACTATAGGTAAAAACAACAACATAGGTGAAGATGATGCAGTTTATGGGAACTACAATTGCAGGGGTGACATCACAGGATATTTTTGTCAATTCTGTCTCAACACTGCTGCCAGAGAAATTGCTCAACGCTGTACCAACAGTGTCTCAACTTTTATATGGTATGATGTTTGCAACATCCGTTACTCCAACCAGAAATTCTTTGGAAAAGTTTCTTCAACTCCATCATGGAATGGTACTGGGTCAGAAAACATAAAGGACTCAACAGAGCTTGTGAAAGCAGAGAATTCCATGGGGAGTTTGATTAGAAAATTGACTTCAGAGGCCAAAAAGAATTGGGCAATGAGTGAGTTTGATTGGAGTGACAATGAAAAAAGGTATGGCATGGTGCAGTGTGGTAAAGACCTTACCAGTGATGGGTGTAGACAATGTTTGGATGATTTGTTGGAGGACATAGTTCCCCAATGTTGTGGGACTAAGGTAGCATGGGCAGTTATGGCTCCAAGTTGTGGGTTCAAGTTTGATGATTATATGTTCTACCAGGATACTAATCAAACTGGATCCTCTTCTCGCATGCCAAGTCCAGCAAAGCAGGAAGGTGAAAATAATGCCAAAACCTTGATCATCACCTTAGTAAGTGTATTGGTGGCAATAGTTCTACTATGTTGTTGGGTCTATTATTCTTGGAACAGGAACTGGTTATGTAAAGATGGATTGTTGTTGGAGACCATTCCTAGAGCTTCTCATGATCATGTTCAGAGGGAGGATTCATTGGATACAGACCTTCCTATAATTCCTTTAAGTGTAATTCAACAGATCACTAATTACTTTTCAGAGTCATCTAAATTAGGAGAAGGTGGATTTGGCTCTGTTTACAAGGGTACTTTACCAGATGGCACAGAAATTGCTGTCAAAAGGCTTGCAGAAACGTCTTGTCAAGGTTTAGAGGAGTTCAAGAATGAAGTGATCTTCATAGCTAAACTGCAACACAGAAACCTTGTGAAACTCTTGGGTTGCTGCATTGAGGGAAATGAAAAGCTACTGGTATATGAGTACATGCCAAATTCAAGCCTTGACTTTCACCTTTTCAATGAGGAAAAGCTAAAGCAACTAGATTGGCAATTACGACTAGGCATTATCAATGGAATTGCAAGAGGACTGTTATACCTTCATGAGGATTCTCGACTTAGAGTAATCCATAGAGATCTCAAAGCAAGCAATGTTCTTCTGGACCATGAAATGAATCCAAAAATATCAGATTTTGGATTGGCAAGGAGATTTGAAAAAGGCCAAAGTCAAACAAAAACAAAAAGAGTTATTGGCACCTACGGATACATGGCTCCAGAATATGCTATGGCAGGGTTCTTTTCAGTGAAATCCGATGTTTTTAGTTTTGGAGTTCTTATATTGGAAATCATTTATGGGAAAAGGAATGGTGAATTCTTTAATTCAGAACATGGGCCAAGTCTTCTATTATATAGTTGGAGACTTTGGTGTGAAGGAAAAAGTTTGGAATTAATCGATCCAATACTCAAAAAATCATACATAGAAAGTGAAGTTATGAAGTGCATACACATTGGTTTATTGTGTGTACAAGAAGATGCAGCAGATCGACCAACCATGTCCACCGTTGTTCTCATGCTGGGGAGTGAAACAATGGCCCTTCCCAAACCCAAGCAACCTGCATTTTCAGTTGGAAGAATGTGCAATAAAGAAGATCCATTTTCAAAAAATTCCAAGGATAATTCTATTAATGAAGTAACAATAACTGTTGTTGCACCTAGATAG 1974 0.3886 MNFPSFILLILFTTTSAQSPIYIYNFCQNSTGKSVSTSYQTNVNNFLSWVTSDSATSGGYNQTTIGKNNNIGEDDAVYGNYNCRGDITGYFCQFCLNTAAREIAQRCTNSVSTFIWYDVCNIRYSNQKFFGKVSSTPSWNGTGSENIKDSTELVKAENSMGSLIRKLTSEAKKNWAMSEFDWSDNEKRYGMVQCGKDLTSDGCRQCLDDLLEDIVPQCCGTKVAWAVMAPSCGFKFDDYMFYQDTNQTGSSSRMPSPAKQEGENNAKTLIITLVSVLVAIVLLCCWVYYSWNRNWLCKDGLLLETIPRASHDHVQREDSLDTDLPIIPLSVIQQITNYFSESSKLGEGGFGSVYKGTLPDGTEIAVKRLAETSCQGLEEFKNEVIFIAKLQHRNLVKLLGCCIEGNEKLLVYEYMPNSSLDFHLFNEEKLKQLDWQLRLGIINGIARGLLYLHEDSRLRVIHRDLKASNVLLDHEMNPKISDFGLARRFEKGQSQTKTKRVIGTYGYMAPEYAMAGFFSVKSDVFSFGVLILEIIYGKRNGEFFNSEHGPSLLLYSWRLWCEGKSLELIDPILKKSYIESEVMKCIHIGLLCVQEDAADRPTMSTVVLMLGSETMALPKPKQPAFSVGRMCNKEDPFSKNSKDNSINEVTITVVAPR* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02501 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Rops3g02501 657 Pfam Domain of unknown function (DUF3403) 612 657 IPR021820 GO:0004674
Rops3g02501 657 Gene3D Transferase(Phosphotransferase) domain 1 415 620 - -
Rops3g02501 657 Gene3D - 20 129 IPR038408 -
Rops3g02501 657 Gene3D - 139 241 IPR038408 -
Rops3g02501 657 SMART serkin_6 339 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g02501 657 Gene3D Phosphorylase Kinase; domain 1 304 414 - -
Rops3g02501 657 CDD STKc_IRAK 345 610 - -
Rops3g02501 657 ProSiteProfiles Gnk2-homologous domain profile. 21 129 IPR002902 -
Rops3g02501 657 Pfam Salt stress response/antifungal 27 127 IPR002902 -
Rops3g02501 657 Pfam Salt stress response/antifungal 157 239 IPR002902 -
Rops3g02501 657 ProSiteProfiles Protein kinase domain profile. 339 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g02501 657 ProSiteProfiles Gnk2-homologous domain profile. 135 241 IPR002902 -
Rops3g02501 657 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 35 654 - -
Rops3g02501 657 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524
Rops3g02501 657 FunFam cysteine-rich receptor-like protein kinase 10 415 617 - -
Rops3g02501 657 FunFam Cysteine-rich receptor-like protein kinase 28 23 128 - -
Rops3g02501 657 Pfam Protein tyrosine and serine/threonine kinase 342 608 IPR001245 GO:0004672|GO:0006468
Rops3g02501 657 SUPERFAMILY Protein kinase-like (PK-like) 322 610 IPR011009 -
Rops3g02501 657 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 305 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02501 Rops-Chr3 51698640 51716062 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02501 3 657 Receptor kinase-like Gene Family AT4G05200 41.789 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops3g02501 PK_Tyr_Ser-Thr 2.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02501 - - mtr:11406796 939.873