Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02494 ATGAAACGGAAGAATAAAGAGATTGAAGATGAGGTGCTCCGCTATGATCATACTGGGTCACAGTTGAATGATGAGGGTTCTGAAGGAAGTGCCTGTGGAGTTGCTCTGAAGAAAGGACCATGGACATCTGCTGAAGATGAAATTTTGGTGGATTATGTCAACAAACATGGGGAGGGGAACTGGAATGCTGTTCAGAAGCACACGGGCCTTTTACGTTGCGGAAAAAGTTGTCGACTGCGGTGGGCTAATCACCTAAGGCCAAATCTAAAGAAAGGGGCTTTTACTGCAGAAGAGGAGAAGTTGATTGCAGAGCTTCATGCAAAAATGGGAAACAAATGGGCACGCATGGCAGCACATTTGCCTGGTCGTACAGATAATGAGATAAAGAACTACTGGAACACCCGGATCAAGAGGCGTCAACGGGCTGGCTTGCCACTTTATCCTGCTGAAGTTTGTTTGCAAGCATTGCAAGAGAGTCAGCATGGCCAAAGCACTCGTGGAATTAATGGTGGCAATAAAATGCATCCTGATTTGTTGCAGAAAAAGAGTTATGAGATACATGATGCAATATTTGACAGTCTGAAGGATAATCAGGGAATCTTACCTTATGTGACTGAGCTTCCTAATATTTCTGCTTATGGCAATGTGCAGAAAGGTCTTGATTCTTCTCAGTATTGTGGTTTTGTGCCATCAACATCATCTAACCATAAACGTGTTCGACAGTCAACAATTCCATTTCTTGATTCCAGTGGCATGAACAGAAATGGTTTTTATCCATTTGATCATATTCAGGATAATACTCCTGATAATATTGCACGATCATTTGGAATGGAATCACCCCTTGATCCTGGTCCTGCCTCACACAGCTCAATTTGTTACAGCCATTCACTTTCAAATGGCAATTCCTCTACTTCTAAGCCAACTTCGGAGGCTGAGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAAATTGATTTAGGTAGCTGGGGTACTTCTCCCCCTCCTCCTTTGCTTGAATCAGTTGATGATTTCATTCAGTCTCCTACACCAATTAGTACACTAGAGTCAGATTGTTCTCCACAAAATAGTGGCCTGCTGGATGCTTTACTTTATCAGGCAAAGACTCTGAGCAGTTCAAAGAAACATTATTATGACAAGAGTTCAAATTCATCTACTGCAACTCCTGGTGACAGAGCGGACAGCTCTGCTTTGAACATGTACAAGACAGAATGGGAAGACTATGCTGACCCGGTATCACCATTCGGTGCATCTTCAATATTGAACGAGTGCCCTGCTGTTAGTGCCAATGCTAATTCATTGGATGAACAGCCAACTTTTCCGACCTTCAATGGCAACATTGTGAAATTAGAGTATGTTGACCAGGTTTGGACCCCTGACAGGGAAAATCAAACCATGTCCCTGCTGAATATTACTCGGCCAGACTTCTTGCTTGCTGCAGATTGGCATGAGCTGGGTTCTGGGCATGGCAAGAATCAAGCCATCACGAATGATGCCACATCGACCCTTATTGGAGACGATTTAGCCACTGACTATAAACATATGACTGCTGGAACTTCTAAATCAAGTCAGGTATTAATATCTTCTGGGCTGAGAGAGGATTTCATATGGGTGTGA 1635 0.4343 MKRKNKEIEDEVLRYDHTGSQLNDEGSEGSACGVALKKGPWTSAEDEILVDYVNKHGEGNWNAVQKHTGLLRCGKSCRLRWANHLRPNLKKGAFTAEEEKLIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPAEVCLQALQESQHGQSTRGINGGNKMHPDLLQKKSYEIHDAIFDSLKDNQGILPYVTELPNISAYGNVQKGLDSSQYCGFVPSTSSNHKRVRQSTIPFLDSSGMNRNGFYPFDHIQDNTPDNIARSFGMESPLDPGPASHSSICYSHSLSNGNSSTSKPTSEAEKLELPSLQYPEIDLGSWGTSPPPPLLESVDDFIQSPTPISTLESDCSPQNSGLLDALLYQAKTLSSSKKHYYDKSSNSSTATPGDRADSSALNMYKTEWEDYADPVSPFGASSILNECPAVSANANSLDEQPTFPTFNGNIVKLEYVDQVWTPDRENQTMSLLNITRPDFLLAADWHELGSGHGKNQAITNDATSTLIGDDLATDYKHMTAGTSKSSQVLISSGLREDFIWV* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02494 544 Gene3D - 93 139 - -
Rops3g02494 544 FunFam MYB-related transcription factor 37 90 - -
Rops3g02494 544 CDD SANT 40 85 IPR001005 -
Rops3g02494 544 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 20 506 - -
Rops3g02494 544 MobiDBLite consensus disorder prediction 1 29 - -
Rops3g02494 544 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 85 IPR017930 -
Rops3g02494 544 Pfam Myb-like DNA-binding domain 91 134 IPR001005 -
Rops3g02494 544 Pfam Myb-like DNA-binding domain 38 85 IPR001005 -
Rops3g02494 544 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
Rops3g02494 544 FunFam Transcription factor GAMYB 93 139 - -
Rops3g02494 544 Gene3D - 37 90 - -
Rops3g02494 544 SMART sant 90 138 IPR001005 -
Rops3g02494 544 SMART sant 37 87 IPR001005 -
Rops3g02494 544 SUPERFAMILY Homeodomain-like 36 132 IPR009057 -
Rops3g02494 544 MobiDBLite consensus disorder prediction 269 313 - -
Rops3g02494 544 ProSiteProfiles Myb-like domain profile. 33 85 IPR001005 -
Rops3g02494 544 MobiDBLite consensus disorder prediction 289 311 - -
Rops3g02494 544 CDD SANT 93 134 IPR001005 -
Rops3g02494 544 MobiDBLite consensus disorder prediction 1 18 - -
Rops3g02494 544 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 140 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02494 Rops-Chr3 51451811 51457054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02494 16 526 MYB Transcription Factor Family AT5G06100 44.213 1.26e-121 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops3g02494 Myb_DNA-binding 8.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02494 K09422 - gmx:100810415 840.491