Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02487 ATGGAAGAAGGGTTTTGCCAAAACCTTGATACTGCTTCAGGTTCAGTTGATAAATCTAGGATTGTAGATGTTAAACCTCTACGTAGTTTAGCACCTGTGTTCCCAAAATCTGTTCAAGGTTTTTTCTCTGATCGTTATCCATCTGGGTTTCCTCCATTTTTTTCATTGGACGAACCTCAAGAACCTCTAGAACCTCAAGCATCTCATGTTCCCAAACCAGTTCCTATAAGGTCGTATAGGAGCTCAGTAGTTGAAGAAGCAACCCCAGATGGAGATAATGTAGATACTACTACATCATCTGTGGAGGGGCTCAATGGTGACTGTGTTGTTGATAACCAAAAGTGTGCAGCACCACATTTGCGTAGCTGCAAATCATCCCAGAAGAGGAATAAGACAACAACTCGGAAGTCACAAGTTGATTCGAGTCCTTTGGTTGGCGGTAGTAGCCTTGCTCAACAAGATGATGGTGATCGCGAAGCAGTCAATCGTATACTCATGACATTTGATTCACTTCGAAGAAGGCTCTGCCAACTTGAAGATGCTAAGGAATTGAACACAACAAATGCAATTAAGCGTGCAGATTTAAGAGCAAGCAATGCTTTGACAGTCAAAGGGGTTCGCACAAACACGAGCAAGAGAGTAGGAGTGGTGCCTGGGATTGAAATTGGGGATATTTTCTTTTTGCGAATAGAAATGTGTCTTGTGGGTTTACATGGCCAGTCAATGGCCGGAATAGACTACATGACTATCAAGGATGAGGGTAAGGATGAACCTGTAGCTGTAAGCATTGTTTCATCAGGAGTATATGATAATGATGCAGAGGATAATGATATTTTAATTTATAGTGGTCAGGGTGAGAATTTCAACAAGAAAGATAAGCATGTGACTGATCAGAAGCTTCAAAGGGGTAATCTTGCTTTGGATAGAAGTTCACAGCGACACAATGAAGTAAGAGTTATCCGGGGCTTGAGAGATGCTGTGAATAAAAATACAAAAATCTATGTGTATGATGGTCTGTATAAAATCCAAGATTCTTGGATAGAAAGGGGGAAATCTGGTGGCGGTGTATTCAAGTATAAGTTCGTGAGATTACCTGGACAACCCAGTGCGTTTGCTGTTTGGAAATCGGTTCAGAAGTGGAAGGAAGGTTTTCCTTCAAGGAACGGCCTTATTCTTACGGACCTATCCACAGGAGCTGAGGGTTTTCCTGTATCACTTGTCAATGATGTTGATAATGAGAAGGGCCCTGCTTTTTTCACCTACTTCCATTCTCTCAGAAATCCAAAACCTTTTGGTTTAGTGCAGCCTTCATATGGCTGCAACTGCAACAAAGCATGTGTCCCCGGTGATTTGAGCTGCTCTTGCATTCAAAGAAATGAAGGTGATTTTCCATATACTGCAAATAGCATTCTAGTGAGTCGGAAGCCATTAATTCATGAATGTGGCCCTATGTGTCAGTGTCTTCCTAACTGCAAAAATCGAGTATCCCAGACTGGTTTAAAGCACCACATGGAAGTGTTCAAAACAAAGGATAGAGGGTGGGGACTTCGATCACTAGATCCTATACGTGCTGGTACTTTTATTTGCAAGTATGCAGGAGAAGTTATTGACAAAGCCAAGGTAAGTCAGAATGGGGAAGAAGATAATGATGAATATGTTTTTGATACAAGCCATATTTATGAATCATTTAAGTGGAATTATGAACCTAGCTTACTGGAAGAAATAAGTTCAAATGTATCTAGTGAGGATTATGCTATACCGTCCCCTCTAATTATAAGTGCCAAGAATGTTGGAAATGTGAGTAGATTTATGAATCATAGCTGCTCCCCAAATGTTTTCTGGCAGCCAGTCTTATATGCAGAAAACAATCAATCCTTTCTTCACATTGCATTCTTTGCCCTTAGACACATTCCTCCAATGACAGAGTTAACATATGATTATGGCATTTCCTGTTCTGGTCATGCTGAGGGTAGTAGGACACCCAAAGGGAGAAATAATTGCTTGTGTGGATCATCAAAATGCCGTGGTTCTTTTGGTTGA 2040 0.4098 MEEGFCQNLDTASGSVDKSRIVDVKPLRSLAPVFPKSVQGFFSDRYPSGFPPFFSLDEPQEPLEPQASHVPKPVPIRSYRSSVVEEATPDGDNVDTTTSSVEGLNGDCVVDNQKCAAPHLRSCKSSQKRNKTTTRKSQVDSSPLVGGSSLAQQDDGDREAVNRILMTFDSLRRRLCQLEDAKELNTTNAIKRADLRASNALTVKGVRTNTSKRVGVVPGIEIGDIFFLRIEMCLVGLHGQSMAGIDYMTIKDEGKDEPVAVSIVSSGVYDNDAEDNDILIYSGQGENFNKKDKHVTDQKLQRGNLALDRSSQRHNEVRVIRGLRDAVNKNTKIYVYDGLYKIQDSWIERGKSGGGVFKYKFVRLPGQPSAFAVWKSVQKWKEGFPSRNGLILTDLSTGAEGFPVSLVNDVDNEKGPAFFTYFHSLRNPKPFGLVQPSYGCNCNKACVPGDLSCSCIQRNEGDFPYTANSILVSRKPLIHECGPMCQCLPNCKNRVSQTGLKHHMEVFKTKDRGWGLRSLDPIRAGTFICKYAGEVIDKAKVSQNGEEDNDEYVFDTSHIYESFKWNYEPSLLEEISSNVSSEDYAIPSPLIISAKNVGNVSRFMNHSCSPNVFWQPVLYAENNQSFLHIAFFALRHIPPMTELTYDYGISCSGHAEGSRTPKGRNNCLCGSSKCRGSFG* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02487 679 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 66 679 IPR025794 GO:0016571
Rops3g02487 679 ProSiteProfiles SET domain profile. 502 648 IPR001214 GO:0005515
Rops3g02487 679 Pfam SAD/SRA domain 214 367 IPR003105 -
Rops3g02487 679 ProSiteProfiles YDG domain profile. 215 363 IPR003105 -
Rops3g02487 679 SMART set_7 502 654 IPR001214 GO:0005515
Rops3g02487 679 SMART G9a_1 210 367 IPR003105 -
Rops3g02487 679 Gene3D - 197 382 IPR036987 -
Rops3g02487 679 ProSiteProfiles Pre-SET domain profile. 438 499 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops3g02487 679 SMART preset_2 392 486 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops3g02487 679 Pfam Pre-SET motif 396 494 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops3g02487 679 ProSiteProfiles Post-SET domain profile. 663 679 IPR003616 -
Rops3g02487 679 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 97 673 - -
Rops3g02487 679 SUPERFAMILY SET domain 402 676 IPR046341 -
Rops3g02487 679 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 198 382 - -
Rops3g02487 679 MobiDBLite consensus disorder prediction 121 156 - -
Rops3g02487 679 Pfam SET domain 513 648 IPR001214 GO:0005515
Rops3g02487 679 SUPERFAMILY PUA domain-like 199 385 IPR015947 -
Rops3g02487 679 Gene3D SET domain 385 678 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02487 Rops-Chr3 51359767 51365651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02487 17 679 Su(var)3-9 homologs AT1G73100 52.263 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops3g02487 SAD_SRA 1e-46 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02487 K24405 - gmx:100800651 1092.8