LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops3g02461	ATGGACGAGGAAGAGTCTCAGCAAGGAGCCTCGGGAGTTGCTCAACAAACCCCAGAGCAACTAGTTGTGAGGTCCATAGCTCCTGTAAAGAAGGACTTCCTTCGTCCTCCTCCTGTTCGAGATTCCTCTCCAAACGACGATGTTTCCATCGCCAATGATAAGAAACCCCCTGTTGTAGTGAAGGAGAAGAAATCTAAGCGCCAACTCAAACGCGAACGTCGTCAGGAACAAAAGTCAGCACGAAACCTTTGTCCTCAACTAGCGAAGACAGGTGATGTTAGTTTGTGTCCTTATAAAGAAAAGTGTCGATTCAACCATGATTTAGAAGCCTTCAAGGCACAGAAACCAGCTGATTTGGAGGGAGAATGCCCTTTCTTTAAATCTGAAGGCTCTTGCCCTTATGGGTTGGCATGTAGATTTTCAAATACTCATGGAGATGGTGTGCCTTCTGCTCCCAATCCGAATGGTCTGAAGAAAAGTTCTGAGGTTAATGGATTGAGCAAAGATGTTCAAAAGCTCTTGTGGAAAAATAAGATGAGTTTCCCCAAGGCAGATGCCAAACTCAAGTCTCTTGGCCTCTCGGGACTCTCTAAGTCAAAAAGGAATGACTTGGAAAATAAAGATGGTGGTGACAATGGTTCAAATAAATGCGATCAGTCTGATGACAACGGCTCTTGTGTGGTTACCTCTGACATAGGTTCTAAGGTAGAATGCTCTGAAGAAGTTATAAAAGATGATGACTTTGATGGAAAATTAGAATCTGATGTACTTTGCCCCCAGAAAAGAAGAAAAACTGTAGAAAATAATGAACCTGGGGAGACAGAAAGTGAAGATGTGAGTGTTACTGAGCAAATTGTTGATAGAAGCTGTAAGAAGAAATTTTTCTCTGATCTCAAGCATTTTGTGTGGGATGAGCCATATATTTTTCGGAGATGTGTTGATGGCATCTATAGAAGATGTGTTGCAGAAGATGAAGTTCAAGATATTCTGAGTTGCTGTCACTCTTCACCTTATAGAGGACATGCTAGTTCCTCCAAGACAGCAGCCAAGGTTCTCCAATCCGGTTTCTTTTGGCCACATATTTTCAAAGATGCAAAGAACTTTGTAAGTTCTTGTGACAATTGCCAAAGAACCGGAAACATATCCAGAAGACATGAGATGCCTTTGAATGGTATCCTGGAGGTGGAAATATTTGATGTTTGGGGAATAGATTACATGGGACCATTTCCACCATCTTGCAACAACAAGTACATCCTTGTAGTAGTGGATTATGTCTCCAAATGGGTGGAAGCTGTACCATCCCCAACCAATGATTCAAAAACTGTGATGACGTTATTCAAGAAGATAATATTTCCAAGGTTTGGGGTCCCAAGAGCAATAATCAGTGATAGAGGTTCTCATTTCATTGAGAAACAATTTGAAAACCTACTCAAGAAATATGGAGTAACTCATAGAGTTGCTACTCCATATTATCCTCAAACCAGTGGACAAGTGGAGGTTTCCAATAGAGAGATCAAGAGCATATTGGAAAAGACTGTGTCAAAATCAAGGAAGGATTGGTCTCTACAACTTGATGATGCTCTATGGGCTTACAGGACTGCTTTCAAGACTCCAATTGGAATGTCTCCATTCCGGTTGATTTATGGCAAGCCTTGTCATCTTCCAGTCGAATTGGAGCATAAAGCCTTTTGGGCCATTAAGCTCTTGAACTTTGATCTGAAGACTGCTGGAGAGAAGAGGAAACTTCAACTTAATGAGCTTGATGAGTTGAGACTCGATGCTTATGTACATGCCAAGACTTACAAAAAACAAACCAAAAGATGGCATGATAAACACATTTTGCGTAGGGAATTCAAGGAAGGAGATCTTGTGCTACTCTTCAACTCAAGATTGAAGTTATTTCCAGGGAAGCTCAAGTTTAGATGGTCTGGACCATTCCAAGTCAAACAAGTATTTCCTTATGGTGCTATTGAGATTTGGAGTGAGTCGACTGGATCCTTCAAGGTCAATGGACAACGGTTGAAGAAGTACCTTGCAGATGAACCCATTGAAGCAAGCATTGAGTTTAAGCTTCTTTAA	2079	0.4132	MDEEESQQGASGVAQQTPEQLVVRSIAPVKKDFLRPPPVRDSSPNDDVSIANDKKPPVVVKEKKSKRQLKRERRQEQKSARNLCPQLAKTGDVSLCPYKEKCRFNHDLEAFKAQKPADLEGECPFFKSEGSCPYGLACRFSNTHGDGVPSAPNPNGLKKSSEVNGLSKDVQKLLWKNKMSFPKADAKLKSLGLSGLSKSKRNDLENKDGGDNGSNKCDQSDDNGSCVVTSDIGSKVECSEEVIKDDDFDGKLESDVLCPQKRRKTVENNEPGETESEDVSVTEQIVDRSCKKKFFSDLKHFVWDEPYIFRRCVDGIYRRCVAEDEVQDILSCCHSSPYRGHASSSKTAAKVLQSGFFWPHIFKDAKNFVSSCDNCQRTGNISRRHEMPLNGILEVEIFDVWGIDYMGPFPPSCNNKYILVVVDYVSKWVEAVPSPTNDSKTVMTLFKKIIFPRFGVPRAIISDRGSHFIEKQFENLLKKYGVTHRVATPYYPQTSGQVEVSNREIKSILEKTVSKSRKDWSLQLDDALWAYRTAFKTPIGMSPFRLIYGKPCHLPVELEHKAFWAIKLLNFDLKTAGEKRKLQLNELDELRLDAYVHAKTYKKQTKRWHDKHILRREFKEGDLVLLFNSRLKLFPGKLKFRWSGPFQVKQVFPYGAIEIWSESTGSFKVNGQRLKKYLADEPIEASIEFKLL*	693

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops3g02461	692	Gene3D	-	73	149	-	-
	Rops3g02461	692	ProSiteProfiles	Integrase catalytic domain profile.	384	551	IPR001584	GO:0015074
	Rops3g02461	692	PANTHER	ENDONUCLEASE-RELATED	76	651	-	-
	Rops3g02461	692	Pfam	Integrase core domain	399	492	IPR001584	GO:0015074
	Rops3g02461	692	Pfam	Integrase zinc binding domain	323	378	IPR041588	-
	Rops3g02461	692	MobiDBLite	consensus disorder prediction	200	215	-	-
	Rops3g02461	692	SMART	c3hfinal6	79	108	IPR000571	GO:0046872
	Rops3g02461	692	SMART	c3hfinal6	119	146	IPR000571	GO:0046872
	Rops3g02461	692	FunFam	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]	74	152	-	-
	Rops3g02461	692	ProSiteProfiles	Zinc finger C3H1-type profile.	122	147	IPR000571	GO:0046872
	Rops3g02461	692	MobiDBLite	consensus disorder prediction	1	83	-	-
	Rops3g02461	692	MobiDBLite	consensus disorder prediction	198	223	-	-
	Rops3g02461	692	ProSiteProfiles	Zinc finger C3H1-type profile.	78	109	IPR000571	GO:0046872
	Rops3g02461	692	Coils	Coil	59	79	-	-
	Rops3g02461	692	Gene3D	-	283	378	-	-
	Rops3g02461	692	MobiDBLite	consensus disorder prediction	8	22	-	-
	Rops3g02461	692	SUPERFAMILY	Ribonuclease H-like	397	545	IPR012337	-
	Rops3g02461	692	Gene3D	-	394	594	IPR036397	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops3g02461	Rops-Chr3	50700429	50705925	Dispersed/Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Rops3g02461		rve	1.8e-15	CL0219

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops3g02461	-		-	bvg:109134684	620.542