Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02460 ATGAGCCTTCAGTTGATGAAGCCTCCATTTCCCTCTCTCTTGGTCTTCCTGGCCAACACAACCCAAAAGTCTCATCCTAAAACCACTCTGCTAATCTGCATCATAATCAGCAAAACCCTACCCTCTATTTCTGAAGTATCTATCTATCTATCTCTGGTGCCGAGAACAACGCCGAACGAAGCAAACTGCTATGGAGCCTCGGGAGTTGCTCAACAAACCCCAGAGCAACTAGTTGTGAGGTCCATAGCTCCTGTAAAGAAGGACTTCCGTCGTCCTCCTCCTGTTCGAGATTCCTCTCCAAACGACGACGTTTCCATCGCCAATGATAAGAAACCCCCTGTTGTAGTGAAGGAGAAGAAATCTAAGCGCCAACTCAAACGCGAACGTCGTCAGGAACAAAAGTCAGCACGAAACCTTTGTCCTCAACTAGCGAAGACAGGTGATGTTAGTTCGTGTCCTTATAAAGAAAAGTGTCGATTCAACCATGATTTAGAAGCCTTCAAGGCACAGAAACCAGCTGATTTGGAGGGAGAATGCCCTTTCTTTAAATCTGAAGGCTCTTACCCTTATGGGTTGGCATGTAGATTTTCAAATACTCATGGAGATGGTGTGCCTTCTGCTCCCAATCCGAATGGTCTGAAGAAAAGTTCTGAGGTTACTGGATTGAGCAAAGATGTTCGAAAGCTCTTGTGGAAAAATAAGATGAGTTTCCCCAAGGCAGATGCCAAACTCAAGTCTCTTGGCCTCTCGGGACTCTCTAAGTCAAAAAGGAATGACTTGGAAAATAAAGATGGTGGTGACAATGGTTCAAATAAATGCGATCAGTCTGATGACAACGGCTCTTGTGTGGTTACCTCTGACACAGGTTCTAAGAAAAGAAGAAAAACTGTAGAAAATAATGAACCTGGGGAGACAGAAAGTGAAGATGTGAGTGTTACTGAGCAAATTGTTGATAGAAGGCGTGTAAGATGCGAACAAGAAGCGGGGATCGATCTTTGTAAGCCCCGAAACTGA 1014 0.4467 MSLQLMKPPFPSLLVFLANTTQKSHPKTTLLICIIISKTLPSISEVSIYLSLVPRTTPNEANCYGASGVAQQTPEQLVVRSIAPVKKDFRRPPPVRDSSPNDDVSIANDKKPPVVVKEKKSKRQLKRERRQEQKSARNLCPQLAKTGDVSSCPYKEKCRFNHDLEAFKAQKPADLEGECPFFKSEGSYPYGLACRFSNTHGDGVPSAPNPNGLKKSSEVTGLSKDVRKLLWKNKMSFPKADAKLKSLGLSGLSKSKRNDLENKDGGDNGSNKCDQSDDNGSCVVTSDTGSKKRRKTVENNEPGETESEDVSVTEQIVDRRRVRCEQEAGIDLCKPRN* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02460 337 Coils Coil 115 135 - -
Rops3g02460 337 MobiDBLite consensus disorder prediction 272 287 - -
Rops3g02460 337 MobiDBLite consensus disorder prediction 256 271 - -
Rops3g02460 337 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 130 208 - -
Rops3g02460 337 Gene3D - 129 205 - -
Rops3g02460 337 ProSiteProfiles Zinc finger C3H1-type profile. 134 165 IPR000571 GO:0046872
Rops3g02460 337 MobiDBLite consensus disorder prediction 253 313 - -
Rops3g02460 337 MobiDBLite consensus disorder prediction 288 302 - -
Rops3g02460 337 MobiDBLite consensus disorder prediction 88 139 - -
Rops3g02460 337 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 72 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02460 Rops-Chr3 50681925 50683087 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops3g02460 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02460 K05544 - gmx:100783494 352.829