Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02455 ATGTCTTCCTTAAACCACTATGGTAAAGTTGATGAAGCTGAGCAAGCCATGCTTGAAATTCATAGGAAGACCCGAAAGAGAATCACCATCATAATCTTATCCACAATAGTCCTTGTTGGTATTGTGTGTGCTGCAGTGTTCGGAACTGTTGCTCACAACAATGCTCATGATGATGACAAATCAAATGAAGACAATGCTCAATCATTTTCTACCTCTGTGAAAGCTATTTGTGATGTGACATTGTACAAGGATGCATGTTATAGAAGCCTTGAGCCTCTTGTGCATTCAGGGCAGGTTCAACCTGAGGAACTTTTCAAGTTGTCAATAAATGTGGCCTTAACTGAGGTTACAAGGGCTGTTCAGTATTTCTCTGATCAGGGAGGTTTCAATGGGTTGAATGTTGATAACAGGACAAAAGAAGCTTTGAAAAATTGCAAGGATCTTTTGGGTCTTGCAGTTGATCATCTTAATAGCTCTTTGTCTTCTGGGTCAAATTCTTCCTTTCTTGATGTTTTGGAGGACCTTAAAACTTGGTTGAGTGCTTCAGGTACTTACCAGCAGACTTGCATTGAGGGCATTAATGAGGCAGATGAAGCACTGAAAACCAGTGTTACAAGCCATCTCCAAAATTCAACAGAGTACACCAGTAACAGTCTTGCCATCATTACTTGGCTTAACAAGGCTGCAAGCACAGTGAACTTGAGGCGCTTGTTGAGTTTGCCTAATCACCAGAATGAAGAACCAAAGTGGCTTCATTCTAATAACAGGAAGCTACTTCAAAAAGATGATTTAAAGAAGAAAGCTGACATTGTTGTAGCAAAAGATAAGAGTGGAAAATACAAAACAATTTCTGATGCACTCAAACATGTCCCTGAAAATAGTAACAAGAGGACTGTGATCTATGTGAAGAAGGGGATTTATTATGAAAATGTGAGGGTGGAAAAGACCAAATGGAATGTCATGATCATTGGTGATGGCATGAATGCAACAATTGTATCTGGAAGCCTCAACTTTGTTGATGGAACACCAACATTTTCATCTGCAACATTTGGTATGTAA 1059 0.3938 MSSLNHYGKVDEAEQAMLEIHRKTRKRITIIILSTIVLVGIVCAAVFGTVAHNNAHDDDKSNEDNAQSFSTSVKAICDVTLYKDACYRSLEPLVHSGQVQPEELFKLSINVALTEVTRAVQYFSDQGGFNGLNVDNRTKEALKNCKDLLGLAVDHLNSSLSSGSNSSFLDVLEDLKTWLSASGTYQQTCIEGINEADEALKTSVTSHLQNSTEYTSNSLAIITWLNKAASTVNLRRLLSLPNHQNEEPKWLHSNNRKLLQKDDLKKKADIVVAKDKSGKYKTISDALKHVPENSNKRTVIYVKKGIYYENVRVEKTKWNVMIIGDGMNATIVSGSLNFVDGTPTFSSATFGM* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02455 352 SMART PMEI_2 68 221 IPR006501 GO:0004857
Rops3g02455 352 CDD PMEI-like_3 75 227 - -
Rops3g02455 352 PANTHER PECTINESTERASE 34 351 - -
Rops3g02455 352 Gene3D - 264 352 IPR012334 -
Rops3g02455 352 NCBIfam pectinesterase inhibitor domain 67 225 IPR006501 GO:0004857
Rops3g02455 352 Gene3D Invertase/pectin methylesterase inhibitor family protein 70 227 IPR035513 -
Rops3g02455 352 SUPERFAMILY Pectin lyase-like 267 350 IPR011050 -
Rops3g02455 352 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 72 225 IPR035513 -
Rops3g02455 352 FunFam Pectinesterase 69 226 - -
Rops3g02455 352 Pfam Pectinesterase 269 351 IPR000070 GO:0030599|GO:0042545
Rops3g02455 352 Pfam Plant invertase/pectin methylesterase inhibitor 72 221 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02455 Rops-Chr3 50567369 50569343 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02455 7 352 Carbohydrate Esterase AT3G10710 48.711 4.49e-109 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02455 - - gmx:100816529 488.419