Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02454 ATGTCAACCCCATCAAAGTATTTCTTTCCTTTCTTCCTTCTCTCCCTCTTCCTCCTTGTACCATTAATCCTAGCTCAAGCACCATCATCACCACAAACCCCTCCTTCTCCTTCCTCTCAAGCTTGCAAATCCACATTGTACCCAAAGCTATGCCGTTCCATTTTTAAATCTATACATTCCTCACCTTCAGATCCATACCACTTAGGCAAATTCTCTCTCAAAGAATGCCTCAAACAAACCAAGAAATTAGCCAAAGTGTTCAATGACTTCCTCAAAAAACATCACCACTCTTTTCTTAACCATGCAGAGATTGCAGCACTTGATGATTGTAATGAGTTAAACCAACTCAATGTGGGCTACTTAGAGAAAGTCTATGATTTGGTGAAATCATCATCATCAGAATCCAACACTGATGAGTTGGTTGAAAATGTTGAAACTTATCTTAGTGCCGTGGCAACTAACCATTACACTTGCTATGATGGGTTGGTTGTGATTAAGAGTAACATTACCAATGCACTTGTTGTGCCTCTCACTAATATGACACAACTCTATAGTGTGTCACTTGCATTGGTTACTCAAGCTCTCAAGAAAAACCTCAAGAAACATAAGACACGAAAACATGGTCTTCCCACTAAGGCTTTCAAGGTTAGGCAGCCACTTGAAAAACTAATTAAGCTTCTTCGCACAAAGCATAGTTGCAATAAATCATCCAATTGTACTAGAAGTGAAAGGATTCTTACAGAAAGCAAAAGCAAAGGAATTTTATTGAAAGACTATGTGATTGTGAGCCTTGATGGCACAGACAACTTCACTTCCATTGGAGATGCTATTGCTGCTGCACCTGACAATTCAAAGCCTGAAGATGGCTATTTTCTTATCTTTGCAAGAAAAGGATTATATGAGGAATATGTTACTGTTCCCATACAAAAGAAGAATATCTTGCTTATTGGTGATGGTATCAACAAAACTTGCATCACAGGGAATCATAGTGTGGTAGATGGTTGGACAACTTACAATTCTTCAACCTTTGGTAAGATTGATGCTGCACCAGACTTGGCTGAGGAATTGAGTTCCACTGAAAATTACTTAGGAAGACCATGGAAAGAGTATTCAAGGACTGTGTATTTGCAATCATATATTGGTGATCTAATTTATCCTTCTGGATGGTTGGAGTGGAATGGCACAGATGGGTTAGACACTCTCTTTTATGGTGAGTTCAACAACTATGGACCTGGTGCTAAGACCAAAAATAGGGTAAATTGGAAAGGTTACAATTTGTTGAGTGTTAGTCAAGCTTGGAACTTTACTGTCCTTAATTTTACCTTAGGGAATACATGGCTTCCAGACACAGATATACCCTACATTGGAGGACTACTAGATAACTGA 1386 0.3882 MSTPSKYFFPFFLLSLFLLVPLILAQAPSSPQTPPSPSSQACKSTLYPKLCRSIFKSIHSSPSDPYHLGKFSLKECLKQTKKLAKVFNDFLKKHHHSFLNHAEIAALDDCNELNQLNVGYLEKVYDLVKSSSSESNTDELVENVETYLSAVATNHYTCYDGLVVIKSNITNALVVPLTNMTQLYSVSLALVTQALKKNLKKHKTRKHGLPTKAFKVRQPLEKLIKLLRTKHSCNKSSNCTRSERILTESKSKGILLKDYVIVSLDGTDNFTSIGDAIAAAPDNSKPEDGYFLIFARKGLYEEYVTVPIQKKNILLIGDGINKTCITGNHSVVDGWTTYNSSTFGKIDAAPDLAEELSSTENYLGRPWKEYSRTVYLQSYIGDLIYPSGWLEWNGTDGLDTLFYGEFNNYGPGAKTKNRVNWKGYNLLSVSQAWNFTVLNFTLGNTWLPDTDIPYIGGLLDN* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02454 461 CDD PMEI-like_3 41 192 - -
Rops3g02454 461 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 193 IPR035513 -
Rops3g02454 461 Pfam Plant invertase/pectin methylesterase inhibitor 40 190 IPR006501 GO:0004857
Rops3g02454 461 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 194 IPR035513 -
Rops3g02454 461 Gene3D - 255 345 IPR012334 -
Rops3g02454 461 Pfam Pectinesterase 345 443 IPR000070 GO:0030599|GO:0042545
Rops3g02454 461 Pfam Pectinesterase 260 344 IPR000070 GO:0030599|GO:0042545
Rops3g02454 461 SMART PMEI_2 34 190 IPR006501 GO:0004857
Rops3g02454 461 PANTHER PECTINESTERASE 19 344 - -
Rops3g02454 461 Gene3D - 346 460 IPR012334 -
Rops3g02454 461 SUPERFAMILY Pectin lyase-like 257 456 IPR011050 -
Rops3g02454 461 NCBIfam pectinesterase inhibitor domain 13 193 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02454 Rops-Chr3 50557489 50562179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02454 346 459 Carbohydrate Esterase AT3G10720 66.667 3.99e-50 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02454 K01051 - gmx:100776781 474.167