Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02449 ATGCAACAGAGGCTGAAGTTGCAGCAACAACAAGCCCTCATGCAACGAGCTTTGCTTCAGCAGCAACAGATGTACCACCCTGGCATGCTTGCCGCTGCTATGTCTCAGATGGAGCCTGTTCCAAGTGGAAATCTGCCTCCTGGTTTTGATACTTCTGCATGCCGTAGTGTTTACGTAGGAAATATTCATGTAAATGTCACCGATAAGCTTCTTGCGGAAGTTTTTCAGAGTGCTGGTCCTCTTGCTGGGTGCAAGCTTATAAGAAAAGAAAAGTCCTCTTATGGTTTTGTGGACTACCATGATCGAGCATCTGCAGCCCTTGCAATAATGACTTTGCATGGACGGCAACTATATGGTCAAGCACTTAAGGTGAATTGGGCATATGCCAATAACAGTAGGGAGGATACCTCAGGGCACTTCAATGTATTTGTCGGTGATTTGAGCCCCGAGGTTACTGATGCAACTTTATTTGCATGCTCCTCGGTCTATCCTAGTTGTTCTGATGCAAGGGTTATGTGGGATCACAAAACTGGTCACTCTTGTTACCTTGTCCAAAGGCCTTCCCCATGA 570 0.4632 MQQRLKLQQQQALMQRALLQQQQMYHPGMLAAAMSQMEPVPSGNLPPGFDTSACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANNSREDTSGHFNVFVGDLSPEVTDATLFACSSVYPSCSDARVMWDHKTGHSCYLVQRPSP* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02449 189 FunFam Nucleolysin TIAR-like protein 1 138 - -
Rops3g02449 189 Gene3D - 1 135 IPR012677 -
Rops3g02449 189 Gene3D - 136 182 IPR012677 -
Rops3g02449 189 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 43 180 - -
Rops3g02449 189 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 129 IPR000504 GO:0003723
Rops3g02449 189 SMART rrm1_1 56 125 IPR000504 GO:0003723
Rops3g02449 189 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Rops3g02449 189 SUPERFAMILY RNA-binding domain, RBD 54 181 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02449 Rops-Chr3 50382416 50382985 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02449 56 182 Eukaryotic Initiation Factors Gene Family AT2G23350 30.827 1.20e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02449 K13201 - gmx:100777108 330.872