Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02448 ATGTACCACCCTGGCATGCTTGCCCCCGCTATGTCTCAGATGGAGCCTGTTCCAAGTGGAAATCTGCCTCCTGGTTTTGATACTTCTGCATGCCGTAGTGTTTACGTAGGAAATATTCATGTAAATGTCACCGATAAGCTTCTTGCGGAAGTTTTTCAGAGTGCTGGTCCTCTTGCTGGGTGCAAGCTTATAAGAAAAGAAAAGTCCTCTTATGGTTTTGTGGACTACCATGATCGAGCATCTGCAGCCCTTGCAATAATGACTTTGCATGGACGGCAACTATATGGTCAAGCACTTAAGGTGAATTGGGCATATGCCAATAACAGTAGGGAGGATACCTCAGGGCACTTCAATGTATTTGTCGGTGATTTGAGCCCCGAGGTTACTGATGCAACTTTATTTGCATGCTCCTCGGTCTATCCTAGTTGTTCTGATGCAAGGGTTATGTGGGATCACAAAACTGGTCACTCTTGTTACCTTGTCCAAAGGCCTTCCCCATGA 501 0.4591 MYHPGMLAPAMSQMEPVPSGNLPPGFDTSACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANNSREDTSGHFNVFVGDLSPEVTDATLFACSSVYPSCSDARVMWDHKTGHSCYLVQRPSP* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02448 166 Gene3D - 116 160 IPR012677 -
Rops3g02448 166 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 30 157 - -
Rops3g02448 166 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 106 IPR000504 GO:0003723
Rops3g02448 166 FunFam Nucleolysin TIAR-like protein 1 115 - -
Rops3g02448 166 Gene3D - 8 115 IPR012677 -
Rops3g02448 166 SMART rrm1_1 33 102 IPR000504 GO:0003723
Rops3g02448 166 SUPERFAMILY RNA-binding domain, RBD 32 158 IPR035979 GO:0003676
Rops3g02448 166 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 100 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02448 Rops-Chr3 50367260 50367760 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02448 33 159 Eukaryotic Initiation Factors Gene Family AT2G23350 30.827 6.08e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02448 K13201 - gmx:100790916 316.235