Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02439 ATGGAGATCCAAACTATGTGTTCTCAAGGTGGTGGAGGAGATAGTAATGGGAAATGGTCACAACTCCAGCCTCTGGTGCGGCAAAACTCAATGTATAGTCTCACACTTGATGAAGTTCAGAATCAGTTAGGTGATTTAGGGAAGCCACTAAGTAGTATGAACCTCGATGAGCTTCTAAAAAATGTATGGACTGTTGAGGCAAGCCAGTCCTTGGGTATGGACAGTGAGGGCACAGCACAAGCTAGTCAAGCTGTTCTGCAACATCAGGCTAGTTTGTCATTAACTGGTGCACTAAGCAAGAAGACTGTAGATGAGGTTTGGAGAGATATCCAACAAAAGAAAGATAGCGAGGAGAAGAAGTCACGAGACCAACAACCTACTTTAGGAGAGATGACATTGGAGGATTTCTTGGTGAAAGCAGGTGTTGTTGCAGAAGCATCTTCTAATAAGAAGAATACCAGTACTATACCTGGGATTGATTCAAATGTAGCTGTACCACAGTTTCCTCCTCAAGGTCAGTGGATGCAGTATCCACAACCACAATATCAGCATCCGCAACAAAGTTTAATGGGTATTTATATGCCTAGCCAGGGTATAGCACAGCAATTACACATGGGGGCTGTTGCTTCGTTGGATGTTCCAGTTGCAGATAGTCAGGTGCAACTGCCTTCACCTCTGATGGGAACAGTGTCAGATACGCAGACGCCTGGAAGAAAAAGAAGCACTCCAGAGGACATGATGGAGAAGACTGTAGAGAGGAGGCAGAAAAGGATGATCAAGAATCGGGAATCTGCTGCCCGTTCAAGAGAAAGGAGACAAGCATACACAAATGAATTGGAGCACAAAGTCTCACGCCTGGAAGAGGAAAATGAAAGGCTGAGGAAACGAAAGGAACTAGAGAAGATGTTTCCATGTGCACCACCTCCTGAACCTAAATATCAACTTCGCCGAATGGCATCAGCTCCATTCTGA 972 0.4496 MEIQTMCSQGGGGDSNGKWSQLQPLVRQNSMYSLTLDEVQNQLGDLGKPLSSMNLDELLKNVWTVEASQSLGMDSEGTAQASQAVLQHQASLSLTGALSKKTVDEVWRDIQQKKDSEEKKSRDQQPTLGEMTLEDFLVKAGVVAEASSNKKNTSTIPGIDSNVAVPQFPPQGQWMQYPQPQYQHPQQSLMGIYMPSQGIAQQLHMGAVASLDVPVADSQVQLPSPLMGTVSDTQTPGRKRSTPEDMMEKTVERRQKRMIKNRESAARSRERRQAYTNELEHKVSRLEEENERLRKRKELEKMFPCAPPPEPKYQLRRMASAPF* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02439 323 SUPERFAMILY Leucine zipper domain 253 298 IPR046347 GO:0003700|GO:0006355
Rops3g02439 323 SMART brlzneu 249 317 IPR004827 GO:0003700|GO:0006355
Rops3g02439 323 MobiDBLite consensus disorder prediction 1 20 - -
Rops3g02439 323 CDD bZIP_plant_BZIP46 253 307 - -
Rops3g02439 323 Coils Coil 272 296 - -
Rops3g02439 323 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 256 271 IPR004827 GO:0003700|GO:0006355
Rops3g02439 323 Pfam bZIP transcription factor 253 299 IPR004827 GO:0003700|GO:0006355
Rops3g02439 323 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 251 296 IPR004827 GO:0003700|GO:0006355
Rops3g02439 323 Gene3D - 251 304 - -
Rops3g02439 323 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 26 322 IPR043452 GO:0003700|GO:0045893
Rops3g02439 323 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 251 303 - -
Rops3g02439 323 MobiDBLite consensus disorder prediction 223 237 - -
Rops3g02439 323 MobiDBLite consensus disorder prediction 238 303 - -
Rops3g02439 323 MobiDBLite consensus disorder prediction 223 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02439 Rops-Chr3 49828519 49837297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02439 23 323 bZIP Transcription Factor Family AT3G56850 55.063 5.60e-97 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops3g02439 bZIP_1 1e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02439 K14432 - gmx:100101875 480.715