Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02435 ATGGGGCATGGAACCAGAAAACTCTGTGATGAGTATGAGGTTTCAGAGGTACTAGGAAGAGGTGGATTCTCTGTTGTAAGAAAAGGAACCAAAAAATCAAGCAGTGAGAAAACCCATGTAGCCATCAAAACACTTAGAAGGTTAGGTACTTCCAATAATCCTTCTGGGTTAGCAAGAACAAGAGGTGGTGAAAAGAGCACAGCAACTATCATGGGGTTCCCAACATTGAGACAAGTATCAGTCTCAGATGCCCTTCTCACCAATGAGATTCTTGTCATGAGGAAGATAGTGGAAAATATTTCACCACATCCTAATGTGATTGACCTCTATGATGTGTATGAGGACTCAAATGGGGTTCATCTTGTGTTGGAGCTATGTTCTGGTGGGGAACTGTTTGATAGGATTGTGGCAAAAGATAAGTACTCAGAGACTGAAGCTGCAGCTGTGGTTCATCAGATAGCAGCAGGATTAGAGGCTCTTCATAGAGCTAACATTGTTCATAGGGATTTGAAGCCTGAGAATTGCTTATTCTTGGACATGAGGAAGGACTCTCCTCTTAAGATCATGGACTTTGGGTTGAGTTCTGTTGAAGAATTTACTGACCCAGTTGTTGGTTTGTTTGGATCCATTGATTATGTTTCACCAGAGGCTCTTTCTCAAGGAAAGATAACTACCAAGAGTGACATGTGGTCTTTGGGAGTAATCCTATATATCTTACTATCCGGGTATCCTCCTTTCATTGCTCAGTCTAATCGCCAAAAGCAACAAATGATAATGAATGGGAATTTCAGTTTCTATGAGAAGACTTGGAAGGGCATTTCCCAATCAGCAAAGCAATTGATTTCAGATCTTCTAACTGTTGATCCTAGTAGGAGGCCTAGTGCACAAGAGCTTCTGAGTCATCAATGGGTCATAGGTGAGAAAGCCAAAGATGATGAAATGGACCCTGAGATTGTGTCAAGGTTGCAGAGCTTCAATGCAAGACGCAAACTCCGTGCAGCTGCAATTGCTAGTGTTTGGACCTCTACAATCTTCCTGAGAACCAAAAAACTGAGATCCTTGGTAGGAACACACGATCTCACAGAAGAGGAAATTGAAAATCTCAGGATAAATTTCAAGAAGATATGTGTAAATGGAGACAATGCAACTCTCTCTGAGTTTGAGGAGGTGTTGAAAGCAATGAATATGCCATCATTGATCCCTCTAGCACCACGTATATTTGACTTGTTTGACAACAACCGTGATGGAACAGTTGACATGAGAGAGATACTTTGTGGGTTTTCCAGCCTCAAGAACTCCAAAGGAGATGATGCTCTCCGTTTGTGCTTCCAGATGTATGACACAGATCGATCAGGGTGCATCACCAAGGAAGAAGTAGCATCAATGCTCAGAGCTTTGCCAGATGACTGTCTTCCAGCTGATATCACTGAACCTGGGAAATTGGATGAGATATTTGACAGAATGGATGCCAATAGTGATGGAAAAGTTACCTTTGATGAATTCAAAGCTGCCATGCAAAGAGATAGCTCTCTCCAAGATGTAGTCCTCTCTTCTCTTCGCCAACAATAG 1569 0.4213 MGHGTRKLCDEYEVSEVLGRGGFSVVRKGTKKSSSEKTHVAIKTLRRLGTSNNPSGLARTRGGEKSTATIMGFPTLRQVSVSDALLTNEILVMRKIVENISPHPNVIDLYDVYEDSNGVHLVLELCSGGELFDRIVAKDKYSETEAAAVVHQIAAGLEALHRANIVHRDLKPENCLFLDMRKDSPLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITTKSDMWSLGVILYILLSGYPPFIAQSNRQKQQMIMNGNFSFYEKTWKGISQSAKQLISDLLTVDPSRRPSAQELLSHQWVIGEKAKDDEMDPEIVSRLQSFNARRKLRAAAIASVWTSTIFLRTKKLRSLVGTHDLTEEEIENLRINFKKICVNGDNATLSEFEEVLKAMNMPSLIPLAPRIFDLFDNNRDGTVDMREILCGFSSLKNSKGDDALRLCFQMYDTDRSGCITKEEVASMLRALPDDCLPADITEPGKLDEIFDRMDANSDGKVTFDEFKAAMQRDSSLQDVVLSSLRQQ* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02435 522 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Rops3g02435 522 FunFam calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 347 516 - -
Rops3g02435 522 Gene3D - 348 515 - -
Rops3g02435 522 Gene3D Phosphorylase Kinase; domain 1 58 131 - -
Rops3g02435 522 ProSiteProfiles EF-hand calcium-binding domain profile. 434 469 IPR002048 GO:0005509
Rops3g02435 522 Pfam Protein kinase domain 86 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g02435 522 ProSitePatterns EF-hand calcium-binding domain. 489 501 IPR018247 -
Rops3g02435 522 ProSitePatterns EF-hand calcium-binding domain. 411 423 IPR018247 -
Rops3g02435 522 ProSiteProfiles EF-hand calcium-binding domain profile. 476 511 IPR002048 GO:0005509
Rops3g02435 522 ProSitePatterns Protein kinases ATP-binding region signature. 18 43 IPR017441 GO:0005524
Rops3g02435 522 SMART efh_1 438 466 IPR002048 GO:0005509
Rops3g02435 522 SMART efh_1 402 430 IPR002048 GO:0005509
Rops3g02435 522 SMART efh_1 480 508 IPR002048 GO:0005509
Rops3g02435 522 ProSiteProfiles Protein kinase domain profile. 12 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g02435 522 Pfam EF-hand domain pair 437 506 IPR002048 GO:0005509
Rops3g02435 522 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Rops3g02435 522 SUPERFAMILY Protein kinase-like (PK-like) 7 324 IPR011009 -
Rops3g02435 522 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 131 321 - -
Rops3g02435 522 SMART serkin_6 12 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g02435 522 CDD EFh 405 464 IPR002048 GO:0005509
Rops3g02435 522 PRINTS Recoverin family signature 360 379 - -
Rops3g02435 522 PRINTS Recoverin family signature 496 516 - -
Rops3g02435 522 PRINTS Recoverin family signature 406 427 - -
Rops3g02435 522 PRINTS Recoverin family signature 430 449 - -
Rops3g02435 522 Gene3D Transferase(Phosphotransferase) domain 1 132 347 - -
Rops3g02435 522 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 3 127 - -
Rops3g02435 522 Pfam EF hand 407 422 IPR002048 GO:0005509
Rops3g02435 522 SUPERFAMILY EF-hand 348 512 IPR011992 -
Rops3g02435 522 PANTHER SERINE/THREONINE-PROTEIN KINASE 7 485 - -
Rops3g02435 522 CDD STKc_CAMK 12 303 - -
Rops3g02435 522 Gene3D Phosphorylase Kinase; domain 1 7 52 - -
Rops3g02435 522 ProSiteProfiles EF-hand calcium-binding domain profile. 398 433 IPR002048 GO:0005509
Rops3g02435 522 CDD EFh 439 506 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02435 Rops-Chr3 49747514 49752531 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02435 95 509 EF-hand Containing Proteins AT3G10660 36.879 3.19e-78 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Rops3g02435 Pkinase 1.8e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02435 K13412 - gmx:732616 915.99