Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02431 ATGAAGAGGTCTCCAGCATCTTCTTGTTCATCATCATCTTCTTCCTTTGGGTTTGAAACTCCTATTCAATCAGAGAAAAGAAAGACCAAGCATCCAAGAAGGAATCTCAAGTCACAAAAATGCAAGCAGAACCAAACCACTGGAAGAAGAAGCTCCATTTACAGAGGAGTTACCAGGCATAGGTGGACAGGAAGGTTTGAAGCTCACTTATGGGATAAGAGTTCTTGGAACAACATTCAGAACAAGAAGGGTAGACAAGTTTATTTGGGGGCTTATGATACTGAAGAAGCAGCTGCTCGTACTTATGATCTTGCAGCCCTTAAGTATTGGGGAAAAGATGCAACCTTGAATTTCCCGATAGAAACATATGCCAAGGACCTTGAGGAAATGGACAAGGCTTCAAAAGAAGAGTACTTGGCTTCTTTGCGGCGGCAAAGCAGTGGTTTTTCTAGAGGCATTTCAAAGTATCGTGGGGTGGCTAGGCATCACCACAATGGCCGCTGGGAAGCTCGGATTGGAAGAGTATGTGGTAACAAGTACCTCTACTTGGGGACATATAAAACTCAAGAGGAGGCAGCTGTGGCATATGATATGGCAGCAATAGAGTACAGAGGACTCAATGCAGTGACCAATTTTGACATTAGCAATTACATTGACAAAGTTAAAAAGAAAAATGACCAATCCCAACAAACAGAAGCACAAACAGAAATAGCTCCTAACTCCTGTGACTATGAAGAAGCAGAAGTAGAACAACAGACAACTACAACTACTACTACTACACCCCCACCTGAAAATCAGCACATGCAACCACAGCAACACCAAGTTCAACACACCCATGTTCCTCCAAGTGAGGAATCCTCACTAGTTACTGTTATGGACCATGTTCTTGAACAGGATCTACCATGGAGTTTCATGTATACAGGGTTATCACAGTTTCAAGACCAAGACTTGGCTTTAAGCAAAGCTGAGGATTTCATGGGCATGTTTGATGGTGCAGGATTTGAGGAAGACATTGATTTTCTGTTCAGCACTGAACCTGTTGAGAGTGATATCAATATAAATGCAGTTTTGGATAGTATTAACTGTAATGATACAGATGGGGCTGGTGGAACCATGGTGGTGGATAACAACAAGGAACAGCTATTATCCTTAGCTGCTTCTTCACCATCATCTACAACAACTACAGTTTCTTGTAACTATTCTCTATGA 1209 0.4202 MKRSPASSCSSSSSSFGFETPIQSEKRKTKHPRRNLKSQKCKQNQTTGRRSSIYRGVTRHRWTGRFEAHLWDKSSWNNIQNKKGRQVYLGAYDTEEAAARTYDLAALKYWGKDATLNFPIETYAKDLEEMDKASKEEYLASLRRQSSGFSRGISKYRGVARHHHNGRWEARIGRVCGNKYLYLGTYKTQEEAAVAYDMAAIEYRGLNAVTNFDISNYIDKVKKKNDQSQQTEAQTEIAPNSCDYEEAEVEQQTTTTTTTTPPPENQHMQPQQHQVQHTHVPPSEESSLVTVMDHVLEQDLPWSFMYTGLSQFQDQDLALSKAEDFMGMFDGAGFEEDIDFLFSTEPVESDININAVLDSINCNDTDGAGGTMVVDNNKEQLLSLAASSPSSTTTTVSCNYSL* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02431 402 MobiDBLite consensus disorder prediction 1 49 - -
Rops3g02431 402 MobiDBLite consensus disorder prediction 1 22 - -
Rops3g02431 402 Coils Coil 214 234 - -
Rops3g02431 402 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Rops3g02431 402 PRINTS Ethylene responsive element binding protein signature 195 215 IPR001471 GO:0003700|GO:0006355
Rops3g02431 402 ProSiteProfiles AP2/ERF domain profile. 53 119 IPR001471 GO:0003700|GO:0006355
Rops3g02431 402 Pfam AP2 domain 53 111 IPR001471 GO:0003700|GO:0006355
Rops3g02431 402 Pfam AP2 domain 154 205 IPR001471 GO:0003700|GO:0006355
Rops3g02431 402 MobiDBLite consensus disorder prediction 246 285 - -
Rops3g02431 402 FunFam AP2-like ethylene-responsive transcription factor 52 121 - -
Rops3g02431 402 SMART rav1_2 155 219 IPR001471 GO:0003700|GO:0006355
Rops3g02431 402 SMART rav1_2 53 125 IPR001471 GO:0003700|GO:0006355
Rops3g02431 402 SUPERFAMILY DNA-binding domain 154 215 IPR016177 GO:0003677
Rops3g02431 402 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 26 273 - -
Rops3g02431 402 SUPERFAMILY DNA-binding domain 52 121 IPR016177 GO:0003677
Rops3g02431 402 CDD AP2 154 215 IPR001471 GO:0003700|GO:0006355
Rops3g02431 402 CDD AP2 52 120 IPR001471 GO:0003700|GO:0006355
Rops3g02431 402 FunFam AP2-like ethylene-responsive transcription factor 154 215 - -
Rops3g02431 402 MobiDBLite consensus disorder prediction 227 285 - -
Rops3g02431 402 ProSiteProfiles AP2/ERF domain profile. 155 213 IPR001471 GO:0003700|GO:0006355
Rops3g02431 402 Gene3D AP2/ERF domain 53 121 IPR036955 GO:0003700|GO:0006355
Rops3g02431 402 Gene3D AP2/ERF domain 154 215 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02431 Rops-Chr3 49697630 49703805 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02431 149 230 AP2-EREBP Transcription Factor Family AT5G57390 37.778 2.01e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Rops3g02431 AP2 3.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02431 - - gmx:100789774 584.719